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Research Publications

Knowledge Base : Repository of CSIR-IMTech's Publications

2015

A

Agrawal, Yamini and Khatri, Indu and Subramanian, Srikrishna and Shenoy,, Belle Damodara (2015) Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome biology and evolution, 7 (3). pp. 916-30. ISSN 1759-6653

Arora, Amit (2015) MicroRNA targets: potential candidates for indirect regulation by drugs. Pharmacogenetics and Genomics, 25 (3). pp. 107-125. ISSN 1744-6872

Arora, Amit and Cameotra, Swaranjit Singh (2015) Natural Gas Hydrate as an Upcoming Resource of Energy. Journal of Petroleum & Environmental Biotechnology, 06 (01). ISSN 21577463

Arora, Amit and Cameotra, Swaranjit Singh (2015) Techniques for Exploitation of Gas Hydrate (Clathrates) an Untapped Resource of Methane Gas. Journal of Microbial & Biochemical Technology, 07 (02). ISSN 19485948

Arora, Amit and Chandrajit, Balomajumder and Cameotra, Swaranjit Singh (2015) Natural Gas Hydrate (Clathrates) as an Untapped Resource of Natural Gas. Journal of Petroleum & Environmental Biotechnology, 06 (04). ISSN 21577463

Arora, Amit and Cameotra, Swaranjit Singh and Chandrajit, Balomajumder (2015) Field Testing of Gas Hydrates - An Alternative to Conventional Fuels. Journal of Petroleum & Environmental Biotechnology, 06 (05). ISSN 21577463

B

Baindara, Piyush and Chaudhry, Vasvi and Mittal, Garima and Liao, Luciano M and Matos, Carolina O and Khatri, Neeraj and Franco, Octavio L and Patil, Prabhu B and Korpole, Suresh (2015) Characterization of the Antimicrobial Peptide Penisin, a Class Ia Novel Lantibiotic from Paenibacillus sp. Strain A3. Antimicrobial agents and chemotherapy, 60 (1). pp. 580-91. ISSN 1098-6596

Bankapalli, Leela Krishna and Mishra, Rahul Chandra and Singh, Balvinder and Raychaudhuri, Saumya (2015) Identification of Critical Amino Acids Conferring Lethality in VopK, a Type III Effector Protein of Vibrio cholerae: Lessons from Yeast Model System.PloS one, 10 (10). e0141038. ISSN 1932-6203

Bari, Vinay K and Sharma, Sushma and Alfatah, Md and Mondal, Alok K and Ganesan, K (2015) Plasma Membrane Proteolipid 3 Protein Modulates Amphotericin B Resistance through Sphingolipid Biosynthetic Pathway. Scientific reports, 5. p. 9685. ISSN 2045-2322

Bhatia, Rakesh and Gautam, Ankur and Gautam, Shailendra K and Mehta, Divya and Kumar, Vinod and Raghava, G.P.S. and Varshney, Grish C (2015) Assessment of SYBR green I dye-based fluorescence assay for screening antimalarial activity of cationic peptides and DNA intercalating agents. Antimicrobial agents and chemotherapy, 59 (5). pp. 2886-9. ISSN 1098-6596

Bhutani, Isha and Loharch, Saurabh and Gupta, Pawan and Madathil, Rethi and Parkesh, Raman (2015) Structure, dynamics, and interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. PloS one, 10 (3). e0119771. ISSN 1932-6203

Bishnoi, Ritika and Khatri, Indu and Subramanian, Srikrishna and Ramya, T N C (2015) Prevalence of the F-type lectin domain.Glycobiology, 25 (8). pp. 888-901. ISSN 1460-2423

C

Chandra, Vemika and Bhagyaraj, Ella and Nanduri, Ravikanth and Ahuja, Nancy and Gupta, Pawan (2015) NR1D1 ameliorates Mycobacterium tuberculosis clearance through regulation of autophagy. Autophagy, 11 (11). pp. 1987-1997. ISSN 1554-8635

Chandra, Vemika and Bhagyaraj, Ella and Parkesh, Raman and Gupta, Pawan (2015) Transcription factors and cognate signalling cascades in the regulation of autophagy. Biological reviews of the Cambridge Philosophical Society. ISSN 1469-185X

Chaudhry, Vasvi and Baindara, Piyush and Pal, Vijay Kumar and Chawla, Niharika and Patil, Prabhu B. and Korpole, Suresh (2015)Methylobacterium indicum sp. nov., a facultative methylotrophic bacterium isolated from rice seed. Systematic and Applied Microbiology. ISSN 07232020

Chauhan, Anoop S and Rawat, Pooja and Malhotra, Himanshu and Sheokand, Navdeep and Kumar(1), Manoj and Patidar, Anil and Chaudhary, Surbhi and Jakhar, Priyanka and Raje, Chaaya I and Raje, Manoj (2015) Secreted multifunctional Glyceraldehyde-3-phosphate dehydrogenase sequesters lactoferrin and iron into cells via a non-canonical pathway. Scientific reports, 5. p. 18465. ISSN 2045-2322

Chodisetti, Sathi Babu and Gowthaman, Uthaman and Rai, Pradeep K and Vidyarthi, Aurobind and Khan, Nargis and Agrewala, J N(2015) Triggering through Toll-like receptor 2 limits chronically stimulated T-helper type 1 cells from undergoing exhaustion. The Journal of infectious diseases, 211 (3). pp. 486-96. ISSN 1537-6613

Chopra, Lipsy and Singh, Gurdeep and Jena, Kautilya Kumar and Verma, Himanshu and Sahoo, Debendra K (2015) Bioprocess development for the production of sonorensin by Bacillus sonorensis MT93 and its application as a food preservative. Bioresource Technology, 175. pp. 358-366. ISSN 09608524

Chopra, Lipsy and Singh, Gurdeep and Kumar Jena, Kautilya and Sahoo, Debendra K (2015) Sonorensin: A new bacteriocin with potential of an anti-biofilm agent and a food biopreservative. Scientific reports, 5. p. 13412. ISSN 2045-2322

D

Dhar, Jesmita and Chakrabarti, Pinak and Saini, Harpreet and Raghava, G.P.S. and Kishore, Raghuvansh (2015) ω-Turn: a novel β-turn mimic in globular proteins stabilized by main-chain to side-chain C−H···O interaction. Proteins, 83 (2). pp. 203-14. ISSN 1097-0134

Dixit, Pooja and Mehta, Ananya and Gahlawat, Geeta and Prasad, G. S. and Choudhury, Anirban Roy (2015) Understanding the effect of interaction among aeration, agitation and impeller positions on mass transfer during pullulan fermentation by Aureobasidium pullulans. RSC Adv., 5 (49). pp. 38984-38994. ISSN 2046-2069

Dkhar, Hedwin Kitdorlang and Gopalsamy, Anupriya and Loharch, Saurabh and Kaur, Amandeep and Bhutani, Isha and Saminathan, Kanmani and Bhagyaraj, Ella and Chandra, Vemika and Swaminathan, Kunchithapadam and Agrawal, Pushpa and Parkesh, Ramanand Gupta, Pawan (2015) Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure- and ligand-based virtual screening. The Journal of biological chemistry, 290 (1). pp. 76-89. ISSN 1083-351X

E

Ettayapuram Ramaprasad, Azhagiya Singam and Singh, Sandeep and Raghava, G.P.S. and Venkatesan, Subramanian (2015)AntiAngioPred: A Server for Prediction of Anti-Angiogenic Peptides. PloS one, 10 (9). e0136990. ISSN 1932-6203

G

Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Raghava, G.P.S. (2015) Computer-Aided Virtual Screening and Designing of Cell-Penetrating Peptides. Methods in molecular biology (Clifton, N.J.), 1324. pp. 59-69. ISSN 1940-6029

Gautam, Ankur and Sharma, Minakshi and Vir, Pooja and Chaudhary, Kumardeep and Kapoor, Pallavi and Kumar, Rahul and Nath, Samir K and Raghava, G.P.S. (2015) Identification and characterization of novel protein-derived arginine-rich cell-penetrating peptides. European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft für Pharmazeutische Verfahrenstechnik e.V, 89. pp. 93-106. ISSN 1873-3441

Gowthaman, Uthaman and Mushtaq, Khurram and Tan, Amabel C and Rai, Pradeep K and Jackson, David C and Agrewala, Javed N(2015) Challenges and solutions for a rational vaccine design for TB-endemic regions. Critical reviews in microbiology, 41 (3). pp. 389-98. ISSN 1549-7828

Gupta, Amit Kumar and Kumar, Manoj (2015) HPVbase--a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas. Scientific reports, 5. p. 12522. ISSN 2045-2322

Gupta, Ashok Kumar and Parasar, Devraj and Sagar, Amin and Choudhary, Vikas and Chopra, Bhupinder Singh and Garg, Renu and Ganguly, Ashish and Khatri, Neeraj (2015) Analgesic and Anti-Inflammatory Properties of Gelsolin in Acetic Acid Induced Writhing, Tail Immersion and Carrageenan Induced Paw Edema in Mice. PloS one, 10 (9). e0135558. ISSN 1932-6203

Gupta, Sudheer and Kapoor, Pallavi and Chaudhary, Kumardeep and Gautam, Ankur and Kumar, Rahul and Raghava, G.P.S. (2015)Peptide toxicity prediction. Methods in molecular biology (Clifton, N.J.), 1268. pp. 143-57. ISSN 1940-6029

I

Islam, Zeyaul and Kumar, Adarsh and Singh, Suruchi and Salmon, Laurent and Karthikeyan, Subramanian (2015) Structural basis for competitive inhibition of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Vibrio cholerae. The Journal of biological chemistry, 290 (18). pp. 11293-308. ISSN 1083-351X

K

Kachhap, Sangita and Singh, Balvinder (2015) Role of DNA conformation & energetic insights in Msx-1-DNA recognition as revealed by molecular dynamics studies on specific and nonspecific complexes. Journal of biomolecular structure & dynamics. pp. 1-14. ISSN 1538-0254

Kaur, Gurmeet and Subramanian, Srikrishna (2015) The Ku-Mar zinc finger: A segment-swapped zinc ribbon in MarR-like transcription regulators related to the Ku bridge. Journal of structural biology, 191 (3). pp. 281-9. ISSN 1095-8657

Kaur, Gurmeet and Subramanian, Srikrishna (2015) The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers.Biology direct, 10. p. 36. ISSN 1745-6150

Kaur, Gurmeet and Subramanian, Srikrishna (2015) The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon. Journal of structural biology, 190 (1). pp. 38-46. ISSN 1095-8657

Kaur, Gurmeet and Subramanian, Srikrishna (2015) A novel RING finger in the C-terminal domain of the coatomer protein α-COP.Biology direct, 10 (1). p. 70. ISSN 1745-6150

Kaur, Harneet and Dolma, Kunzes and Kaur, Navjot and Malhotra, Ankit and Kumar, Navinder and Dixit, Pooja and Sharma, Deepakand Mayilraj, S. and Choudhury, Anirban Roy (2015) Marine microbe as nano-factories for copper biomineralization. Biotechnology and Bioprocess Engineering, 20 (1). pp. 51-57. ISSN 1226-8372

Kaur, Karambir and Tandon, Himani and Gupta, Amit Kumar and Kumar, Manoj (2015) CrisprGE: a central hub of CRISPR/Cas-based genome editing. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

Kaur, Suneet and Srivastava, Gautam and Sharma, Amar Nath and Jolly, R S (2015) Novel immunosuppressive agent caerulomycin A exerts its effect by depleting cellular iron content. British journal of pharmacology, 172 (9). pp. 2286-99. ISSN 1476-5381

Khan, Nargis and Pahari, Susanta and Vidyarthi, Aurobind and Aqdas, Mohammad and Agrewala, Javed N (2015) NOD-2 and TLR-4 Signaling Reinforces the Efficacy of Dendritic Cells and Reduces the Dose of TB Drugs against Mycobacterium tuberculosis. Journal of innate immunity. ISSN 1662-8128

Khan, Nargis and Vidyarthi, Aurobind and Pahari, Susanta and Agrewala, J N (2015) Distinct Strategies Employed by Dendritic Cells and Macrophages in Restricting Mycobacterium tuberculosis Infection: Different Philosophies but Same Desire. International reviews of immunology. ISSN 1563-5244

Kujur, Weshely and Gurram, Rama Krishna and Haleem, Nazia and Maurya, Sudeep K and Agrewala, J N (2015) Caerulomycin A inhibits Th2 cell activity: a possible role in the management of asthma. Scientific reports, 5. p. 15396. ISSN 2045-2322

Kumar, Anand and Kaur, Gurwinder and Bajaj, Abhay and Kaur, Navjot and Mathan Kumar, Rajendran and Singh, Nitin Kumar and Manickam, Natesan and Mayilraj, Shanmugam (2015) Taxonomic description and Genome sequence of Rheinheimera mesophila sp. nov., strain IITR-13T isolated from an industrial waste site. International Journal of Systematic and Evolutionary Microbiology. ISSN 1466-5026 (In Press)

Kumar, Rahul and Chauhan, Jagat Singh and Raghava, G.P.S. (2015) In Silico Designing and Screening of Antagonists against Cancer Drug Target XIAP. Current cancer drug targets, 15 (9). pp. 836-46. ISSN 1873-5576

Kumar, Ravi and Chaudhary, Kumardeep and Sharma, Minakshi and Nagpal, Gandharva and Chauhan, Jagat Singh and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2015) AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic acids research, 43 (Databa). D956-62. ISSN 1362-4962

Kumar, Ravi and Chaudhary, Kumardeep and Singh Chauhan, Jagat and Nagpal, Gandharva and Kumar, Rahul and Sharma, Minakshi and Raghava, G.P.S. (2015) An in silico platform for predicting, screening and designing of antihypertensive peptides.Scientific Reports, 5. p. 12512. ISSN 2045-2322

L

Loharch, Saurabh and Bhutani, Isha and Jain, Kamal and Gupta, Pawan and Sahoo, Debendra K and Parkesh, Raman (2015)EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

M

Macdonald, Ramsay and Sarkar, Dibyendu and Amer, Brendan R and Clubb, Robert T (2015) Solution structure of the PhoP DNA-binding domain from Mycobacterium tuberculosis. Journal of biomolecular NMR, 63 (1). pp. 111-7. ISSN 1573-5001

Mahajan, Sahil and Saini, Ankita and Chandra, Vemika and Nanduri, Ravikanth and Kalra, Rashi and Bhagyaraj, Ella and Khatri, Neeraj and Gupta, Pawan (2015) Nuclear Receptor Nr4a2 Promotes Alternative Polarization of Macrophages and Confers Protection in Sepsis. The Journal of biological chemistry, 290 (30). pp. 18304-14. ISSN 1083-351X

Mathan Kumar, Rajendran and Kaur, Gurwinder and Kumar, Narender and Kumar, Anand and Singh, Nitin Kumar and Bala, Monuand Kaur, Navjot and Mayilraj, Shanmugam (2015) Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a novel halotolerant bacterium isolated from marine sediment. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Mathan Kumar., Rajenderan and Kaur, Gurwinder and Kumar, Anand and Kaur, Navjot and Bala, Monu and Singh, Nitin Kumar and Mayilraj, Shanmugam (2015) Taxonomic description and Genome sequence of Bacillus campisalissp. nov., a novel member of the genus Bacillusisolated from solar saltern. International journal of systematic and evolutionary microbiology. ISSN 1466-5026 (In Press)

Midha, Samriti and Bansal, Kanika and Sharma, Shikha and Kumar, Narinder and Patil, Prashant P and Chaudhry, Vasvi and Patil, Prabhu B (2015) Genomic Resource of Rice Seed Associated Bacteria. Frontiers in microbiology, 6. p. 1551. ISSN 1664-302X

Mushtaq, Khurram and Sheikh, Javaid A and Amir, Mohammed and Khan, Nargis and Singh, Balvinder and Agrewala, J N (2015)Rv2031c of Mycobacterium tuberculosis: a master regulator of Rv2028-Rv2031 (HspX) operon. Frontiers in microbiology, 6. p. 351. ISSN 1664-302X

N

Nagpal, Gandharva and Gupta, Sudheer and Chaudhary, Kumardeep and Kumar Dhanda, Sandeep and Prakash, Satya and Raghava, G.P.S. (2015) VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants. Scientific Reports, 5. p. 12478. ISSN 2045-2322

Nanduri, Ravikanth and Bhutani, Isha and Somavarapu, Arun Kumar and Mahajan, Sahil and Parkesh, Raman and Gupta, Pawan(2015) ONRLDB-manually curated database of experimentally validated ligands for orphan nuclear receptors: insights into new drug discovery. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

Nanduri, Ravikanth and Mahajan, Sahil and Bhagyaraj, Ella and Sethi, Kanupriya and Kalra, Rashi and Chandra, Vemika and Gupta, Pawan (2015) The Active Form of Vitamin D Transcriptionally Represses Smad7 Signaling and Activates Extracellular Signal-regulated Kinase (ERK) to Inhibit the Differentiation of a Inflammatory T Helper Cell Subset and Suppress Experimental Autoimmune Encephalomyelitis. The Journal of biological chemistry, 290 (19). pp. 12222-36. ISSN 1083-351X

P

Pal, Mohan and Srivastava, Gautam and Sharma, Amar Nath and Kaur, Suneet and Jolly, R S (2015) Biocatalyzed asymmetric reduction of benzils to either benzoins or hydrobenzoins: pH dependent switch. Catal. Sci. Technol., 5 (8). pp. 4017-4028. ISSN 2044-4753

Pandey, Satish K. and Rishi, Praveen and Suri, C Raman and Vinayaka, Aaydha C. (2015) Anodic stripping voltammetry of anti-Vi antibody functionalized CdTe quantum dots for the specific monitoring of Salmonella enterica serovar Typhi. RSC Adv., 5 (107). pp. 88234-88240. ISSN 2046-2069

Panwar, Bharat and Raghava, G.P.S. (2015) Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides. Genomics, 105 (4). pp. 197-203. ISSN 1089-8646

Q

Qureshi, Abid and Tandon, Himani and Kumar, Manoj (2015) AVP-IC50 Pred: Multiple machine learning techniques-based prediction of peptide antiviral activity in terms of half maximal inhibitory concentration (IC50 ). Biopolymers, 104 (6). pp. 753-63. ISSN 1097-0282

R

Rajput, Akanksha and Gupta, Amit Kumar and Kumar, Manoj (2015) Prediction and analysis of quorum sensing peptides based on sequence features. PloS one, 10 (3). e0120066. ISSN 1932-6203

Rathore, Yogendra S and Dhoke, Reema R and Badmalia, Maulik and Sagar, Amin and Ganguly, Ashish (2015) SAXS Data Based Global Shape Analysis of Trigger Factor (TF) Proteins from E. coli, V. cholerae, and P. frigidicola: Resolving the Debate on the Nature of Monomeric and Dimeric Forms. The journal of physical chemistry. B, 119 (20). pp. 6101-12. ISSN 1520-5207

Ravala, Sandeep K and Singh, Suruchi and Yadav, Ghanshyam S and Kumar, Sanjay and Karthikeyan, Subramanian and Chakraborti, Pradip K (2015) Evidence that phosphorylation of threonine in the GT motif triggers activation of PknA, a eukaryotic-type serine/threonine kinase from Mycobacterium tuberculosis. The FEBS journal, 282 (8). pp. 1419-31. ISSN 1742-4658

Rawat, Sanjay and Gupta, Pawan and Kumar, Anil and Garg, Prabha and Suri, C Raman and Sahoo, Debendra K (2015) Molecular mechanism of poly(vinyl alcohol) mediated prevention of aggregation and stabilization of insulin in nanoparticles. Molecular pharmaceutics, 12 (4). pp. 1018-30. ISSN 1543-8392

Rehan, Mohammad and Sagar, Amin and Sharma, Vandna and Mishra, Sanskruti and Ganguly, Ashish and Sahni, Girish (2015)Penta-L-lysine Potentiates Fibrin-Independent Activity of Human Tissue Plasminogen Activator. The journal of physical chemistry. B, 119 (42). pp. 13271-7. ISSN 1520-5207

S

Sebastian Samuel, Jesse and Kumar, Deepak and Babu Chodisetti, Sathi and Agrewala, Javed N and Singh, Balvinder and Guptasarma, Purnananda and Sarkar, Dibyendu (2015) Probing protease sensitivity of recombinant human erythropoietin reveals α3-α4 inter-helical loop as a stability determinant. Proteins, 83 (10). pp. 1813-22. ISSN 1097-0134

Sethi, Deepti and Mahajan, Sahil and Singh, Chaahat and Lama, Amrita and Hade, Mangesh Dattu and Gupta, Pawan and Dikshit, Kanak L (2015) Lipoprotein, LprI, of Mycobacterium tuberculosis acts as a lysozyme inhibitor. The Journal of biological chemistry. ISSN 1083-351X

Shukla, Abha and Cameotra, Swaranjit Singh (2015) Saving Petroleum using Smart Strategies. Journal of Petroleum & Environmental Biotechnology, 06 (03). ISSN 21577463

Siddiqui, K F and Amir, M and Khan, N and Krishna, G Rama and Sheikh, J A and Rajagopal, K and Agrewala, J N (2015) Prime-boost vaccination strategy with bacillus Calmette-Guérin (BCG) and liposomized alpha-crystalline protein 1 reinvigorates BCG potency. Clinical and experimental immunology. ISSN 1365-2249 (In Press)

Singh, Appu Kumar and Manjasetty, Babu and Balasubramani, G L and Koul, Sukirte and Kaushik, Abhishek and Ekka, Mary Krishnaand Singh, Vijay and Kumaran, Sangaralingam (2015) Crystal Structure of Fad35R from Mycobacterium tuberculosis H37Rv in the Apo-State. PloS one, 10 (5). e0124333. ISSN 1932-6203

Singh, Harinder and Gupta, Sudheer and Gautam, Ankur and Raghava, G.P.S. (2015) Designing B-Cell Epitopes for Immunotherapy and Subunit Vaccines. Methods in molecular biology (Clifton, N.J.), 1348. pp. 327-40. ISSN 1940-6029

Singh, Harinder and Kumar, Rahul and Singh, Sandeep and Chaudhary, Kumardeep and Gautam, Ankur and Raghava, G.P.S. (2015)Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines. BMC cancer, 16 (1). p. 77. ISSN 1471-2407

Singh, Harinder and Singh, Sandeep and Raghava, G.P.S. (2015) In silico platform for predicting and initiating β-turns in a protein at desired locations. Proteins, 83 (5). pp. 910-21. ISSN 1097-0134

Singh, Harinder and Singh, Sandeep and Singla, Deepak and Agarwal, Subhash M and Raghava, G.P.S. (2015) QSAR based model for discriminating EGFR inhibitors and non-inhibitors using Random forest. Biology direct, 10. p. 10. ISSN 1745-6150

Singh, Nisha and Kumar, Ashwani (2015) Virulence Factor SenX3 Is the Oxygen-Controlled Replication Switch ofMycobacterium tuberculosis. Antioxidants & Redox Signaling, 22 (7). pp. 603-613. ISSN 1523-0864

Singh, Pradip Kumar and Kumari, Annu and Chawla, Niharika and Pinnaka, Anil Kumar and Korpole, Suresh (2015) Rhodococcus lactis sp. nov., an actinobacterium isolated from sludge of a dairy waste treatment. International journal of systematic and evolutionary microbiology, 65. ISSN 1466-5034

Singh, Pradip Kumar and Solanki, Vipul and Sharma, Shalley and Thakur, Krishan Gopal and Krishnan, Beena and Korpole, Suresh(2015) The intramolecular disulfide-stapled structure of laterosporulin, a class IId bacteriocin, conceals a human defensin-like structural module. The FEBS journal, 282 (2). pp. 203-14. ISSN 1742-4658

Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2015) SATPdb: a database of structurally annotated therapeutic peptides. Nucleic Acids Research, 44 (D1). D1119-D1126. ISSN 0305-1048

Singh, Sandeep and Singh, Harinder and Tuknait, Abhishek and Chaudhary, Kumardeep and Singh, Balvinder and Kumaran, S and Raghava, G.P.S. (2015) PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues. Biology direct, 10 (1). p. 73. ISSN 1745-6150

Singh, Satish and Rathore, Yogendra Singh and Bhando, Timsy and Hade, Mangesh Dattu and Ganguly, Ashish and Dikshit, Kanak L(2015) Bilobed shape of PadA reveals the connectivity from single to multi-domain bacterial plasminogen activators. International journal of biological macromolecules, 78. pp. 370-8. ISSN 1879-0003

Sonkusre, Praveen and Singh Cameotra, Swaranjit (2015) Biogenic selenium nanoparticles inhibit Staphylococcus aureus adherence on different surfaces. Colloids and surfaces. B, Biointerfaces, 136. pp. 1051-7. ISSN 1873-4367

Srinivasan, Vijaya Bharathi and Vaidyanathan, Vasanth and Rajamohan, Govindan (2015) AbuO, a TolC-like outer membrane protein of Acinetobacter baumannii, is involved in antimicrobial and oxidative stress resistance. Antimicrobial agents and chemotherapy, 59 (2). pp. 1236-45. ISSN 1098-6596

Srinivasan, Vijaya Bharathi and Venkataramaiah, Manjunath and Mondal, Amitabha and Rajamohan, Govindan (2015) Functional Characterization of AbeD, an RND-Type Membrane Transporter in Antimicrobial Resistance in Acinetobacter baumannii. PloS one, 10 (10). e0141314. ISSN 1932-6203

Srivastava, Gautam and Pal, Mohan and Kaur, Suneet and Jolly, R S (2015) A highly efficient designer cell for enantioselective reduction of ketones. Catalysis Science & Technology, 5 (1). pp. 105-108. ISSN 2044-4753

T

Tyagi, Atul and Tuknait, Abhishek and Anand, Priya and Gupta, Sudheer and Sharma, Minakshi and Mathur, Deepika and Joshi, Anshika and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2015) CancerPPD: a database of anticancer peptides and proteins. Nucleic acids research, 43. D837-43. ISSN 1362-4962

Tyagi, Mohit and Taxak, Nikhil and Bharatam, Prasad V and Nandanwar, Hemraj and Kartha, K P Ravindranathan (2015)Mechanochemical click reaction as a tool for making carbohydrate-based triazole-linked self-assembling materials (CTSAMs).Carbohydrate research, 407. pp. 137-47. ISSN 1873-426X

V

Vaidya, Bhumika and Kumar, Ravinder and Korpole, Suresh and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2015)Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water. International journal of systematic and evolutionary microbiology, 65 (7). pp. 2056-63. ISSN 1466-5034

Venugopalan, Paloth and Kishore, Raghuvansh (2015) Antiparallel Self-Association of a γ,α-Hybrid Peptide: More Relevance of Weak Interactions. Chemistry: an Asian journal. ISSN 1861-471X

Verma, Ashish and Mual, Poonam and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2015) Tamilnaduibacter salinus gen. nov., sp. nov., a halotolerant Gammaproteobacterium within the family Alteromonadaceae isolated from a salt-pan in Tamilnadu, India.International journal of systematic and evolutionary microbiology, 65 (10). pp. 3248-3255. ISSN 1466-5034

Verma, Deepshikha and Das, Lahari and Gambhir, Vandana and Dikshit, Kanak Lata and Varshney, Grish C (2015) Heterogeneity among Homologs of Cutinase-Like Protein Cut5 in Mycobacteria. PloS one, 10 (7). e0133186. ISSN 1932-6203

Vyas, B. and Singh, A.K and Cameotra, Swaranjit Singh (2015) Sorption behaviour of maneb in the agriculture soils and its correlation with soil properties. International Journal of Engineering Research and Science, 1 (8). ISSN 23956992

W

Walia, Navpreet kaur and Cameotra, Swaranjit Singh (2015) Lipopeptides: Biosynthesis and Applications. Journal of Microbial & Biochemical Technology, 07 (02). ISSN 19485948

Y

Yadav, Savita and Karthikeyan, Subramanian (2015) Structural and biochemical characterization of GTP cyclohydrolase II from Helicobacter pylori reveals its redox dependent catalytic activity. Journal of structural biology, 192 (1). pp. 100-15. ISSN 1095-8657

2016

A

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) Evolutionary relationships between heme-binding ferredoxin α + β barrels. BMC bioinformatics, 17. p. 168. ISSN 1471-2105

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) An atypical segment swap in the DN and DC domains of the Acr_tran family resistance-nodulation-cell division pump. Journal of Structural Biology, 196 (3). pp. 358-363. ISSN 10478477

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) An atypical segment swap in the DN and DC domains of the Acr_tran family resistance-nodulation-cell division pump. Journal of structural biology. ISSN 1095-8657 (In Press)

Agrawal, Piyush and Bhalla, Sherry and Usmani, Salman Sadullah and Singh, Sandeep and Chaudhary, Kumardeep and Raghava, G.P.S. and Gautam, Ankur (2016) CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides. Nucleic acids research, 44 (D1). D1098-103. ISSN 1362-4962

Agrawal, Yamini and Narwani, Tarun and Subramanian, Srikrishna (2016) Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp. BMC genomics, 17. p. 367. ISSN 1471-2164

Anil Kumar, Vijjamarri and Goyal, Rajni and Bansal, Roohi and Singh, Nisha and Sevalkar, Ritesh Rajesh and Kumar, Ashwani and Sarkar, Dibyendu (2016) EspR-dependent ESAT-6 Protein Secretion of Mycobacterium tuberculosis Requires the Presence of Virulence Regulator PhoP. The Journal of biological chemistry, 291 (36). pp. 19018-30. ISSN 1083-351X

Arif, Ehtesham and Sharma, Pankaj and Solanki, Ashish and Mallik, Leena and Rathore, Yogendra S and Twal, Waleed O and Nath, Samir K and Gandhi, Darpan and Holzman, Lawrence B and Ostap, E Michael and Ashish, . and Nihalani, Deepak (2016) Structural Analysis of the Myo1c and Neph1 Complex Provides Insight into the Intracellular Movement of Neph1. Molecular and cellular biology, 36 (11). pp. 1639-54. ISSN 1098-5549

Arora, Amit and Cameotra, Swaranjit Singh and Kumar, Rajnish and Balomajumder, Chandrajit and Singh, Anil Kumar and Santhakumari, B and Kumar, Pushpendra and Laik, Sukumar (2016) Biosurfactant as a Promoter of Methane Hydrate Formation: Thermodynamic and Kinetic Studies. Scientific reports, 6. p. 20893. ISSN 2045-2322

B

Bajaj, Abhay and Kumar, Anand and Yadav, Shivani and Kaur, Gurwinder and Bala, Monu and Singh, Nitin Kumar and Mathan Kumar, Rajendran and Manickam, Natesan and Mayilraj, Shanmugam (2016) Isolation and characterization of a novel Gram-negative bacterium Chromobacterium alkanivorans sp. nov., strain IITR-71T degrading halogenated alkanes. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Bhagyaraj, Ella and Nanduri, Ravikanth and Saini, Ankita and Dkhar, Hedwin Kitdorlang and Ahuja, Nancy and Chandra, Vemika and Mahajan, Sahil and Kalra, Rashi and Tiwari, Drishti and Sharma, Charu and Janmeja, Ashok Kumar and Gupta, Pawan (2016)Human Xenobiotic Nuclear Receptor PXR Augments Mycobacterium tuberculosis Survival. Journal of immunology , 197 (1). pp. 244-55. ISSN 1550-6606

Boradia, Vishant Mahendra and Patil, Pravinkumar and Agnihotri, Anushri and Kumar, Ajay and Rajwadi, Kalpesh Kumar and Sahu, Ankit and Bhagath, Naveen and Sheokand, Navdeep and Kumar, Manoj and Malhotra, Himanshu and Patkar, Rachita and Hasan, Navi and Raje, Manoj and Raje, Chaaya Iyengar (2016) Mycobacterium tuberculosis H37Ra: a surrogate for the expression of conserved, multimeric proteins of M.tb H37Rv. Microbial cell factories, 15 (1). p. 140. ISSN 1475-2859

C

Chander, Atul Munish and Kaur, Gurwinder and Nair, Ramesan Girish and Dhawan, Devinder Kumar and Kochhar, Rakesh and Mayilraj, Shanmugam and Bhadada, Sanjay Kumar (2016) Genome Sequencing of Serinicoccus chungangensis Strain CD08_5 Isolated from Duodenal Mucosa of a Celiac Disease Patient. Genome announcements, 4 (2). ISSN 2169-8287

Chander, Atul Munish and Nair, Ramesan Girish and Kaur, Gurwinder and Kochhar, Rakesh and Mayilraj, Shanmugam and Dhawan, Devinder Kumar and Bhadada, Sanjay Kumar (2016) Genome Sequence of Kocuria palustris Strain CD07_3 Isolated from the Duodenal Mucosa of a Celiac Disease Patient. Genome announcements, 4 (2). ISSN 2169-8287

Chandra, Vemika and Bhagyaraj, Ella and Parkesh, Raman and Gupta, Pawan (2016) Transcription factors and cognate signalling cascades in the regulation of autophagy. Biological reviews of the Cambridge Philosophical Society, 91 (2). pp. 429-51. ISSN 1469-185X

Chaudhary, Kumardeep and Kumar, Ritesh and Singh, Sandeep and Tuknait, Abhishek and Gautam, Ankur and Mathur, Deepika and Anand, Priya and Varshney, Grish C and Raghava, G.P.S. (2016) A Web Server and Mobile App for Computing Hemolytic Potency of Peptides. Scientific reports, 6. ISSN 2045-2322

Chaudhary, Kumardeep and Nagpal, Gandharva and Dhanda, Sandeep Kumar and Raghava, G.P.S. (2016) Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants. Scientific reports, 6. p. 20678. ISSN 2045-2322

Chaudhry, Vasvi and Baindara, Piyush and Pal, Vijay Kumar and Chawla, Niharika and Patil, Prabhu B and Korpole, Suresh (2016)Methylobacterium indicum sp. nov., a facultative methylotrophic bacterium isolated from rice seed. Systematic and applied microbiology, 39 (1). pp. 25-32. ISSN 1618-0984

Chaudhry, Vasvi and Patil, Prabhu B (2016) Genomic investigation reveals evolution and lifestyle adaptation of endophytic Staphylococcus epidermidis. Scientific reports, 6. p. 19263. ISSN 2045-2322

D

Dar, Showkat Ahmad and Gupta, Amit Kumar and Thakur, Anamika and Kumar, Manoj (2016) SMEpred workbench: a web server for predicting efficacy of chemically modified siRNAs. RNA biology. ISSN 1555-8584

Dar, Showkat Ahmad and Thakur, Anamika and Qureshi, Abid and Kumar, Manoj (2016) siRNAmod: A database of experimentally validated chemically modified siRNAs. Scientific reports, 6. p. 20031. ISSN 2045-2322

Dhanda, Sandeep Kumar and Chaudhary, Kumardeep and Gupta, Sudheer and Brahmachari, Samir Kumar and Raghava, G.P.S.(2016) A web-based resource for designing therapeutics against Ebola Virus. Scientific reports, 6. p. 24782. ISSN 2045-2322

Dhanda, Sandeep Kumar and Vir, Pooja and Singla, Deepak and Gupta, Sudheer and Kumar, Shailesh and Raghava, G.P.S. (2016) A Web-Based Platform for Designing Vaccines against Existing and Emerging Strains of Mycobacterium tuberculosis. PloS one, 11 (4). e0153771. ISSN 1932-6203

Dhar, Jesmita and Kishore, Raghuvansh and Chakrabarti, Pinak (2016) A novel secondary structure based on fused five-membered rings motif. Scientific reports, 6. p. 31483. ISSN 2045-2322

G

Gahlawat, Geeta and Shikha, Sristy and Chaddha, Baldev Singh and Chaudhuri, Saumya Ray and Mayilraj, Shanmugam and Choudhury, Anirban Roy (2016) Microbial glycolipoprotein-capped silver nanoparticles as emerging antibacterial agents against cholera. Microbial cell factories. ISSN 1475-2859

Ganaie, Arsheed Ahmad and Trivedi, Garima and Kaur, Amanpreet and Jha, Sidharth Shankar and Anand, Shashi and Rana, Vibhutiand Singh, Amit and Kumar, Shekhar and Sharma, Charu (2016) Interaction of Erp Protein of Mycobacterium tuberculosis with Rv2212 Enhances Intracellular Survival of Mycobacterium smegmatis. Journal of bacteriology, 198 (20). pp. 2841-52. ISSN 1098-5530

Gani, Zahid and Boradia, Vishant Mahendra and Raghu Ram, Janaki and Suryavanshi, Prashant Mohan and Patil, Pravinkumar and Kumar, Santosh and Singh, Ranvir and Raje, Manoj and Raje, Chaaya Iyengar (2016) Purification and characterization of glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) from pea seeds. Protein expression and purification, 127. pp. 22-7. ISSN 1096-0279

Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Gupta, Sudheer and Singh, Harinder and Raghava, G.P.S. (2016)Managing Drug Resistance in Cancer: Role of Cancer Informatics. Methods in molecular biology (Clifton, N.J.), 1395. pp. 299-312. ISSN 1940-6029

Gujar, Ravindra and Maurya, Neeraj and Yadav, Vinod and Gupta, Mamta and Arora, Saurabh and Khatri, Neeraj and Sen, Pradip(2016) c-Src Suppresses Dendritic Cell Antitumor Activity via T Cell Ig and Mucin Protein-3 Receptor. Journal of immunology (Baltimore, Md. : 1950), 197 (5). pp. 1650-62. ISSN 1550-6606

Gupta, Amit Kumar and Kaur, Karambir and Rajput, Akanksha and Dhanda, Sandeep Kumar and Sehgal, Manika and Khan, Md Shoaib and Monga, Isha and Dar, Showkat Ahmad and Singh, Sandeep and Nagpal, Gandharva and Usmani, Salman Sadullah and Thakur, Anamika and Kaur, Gazaldeep and Sharma, Shivangi and Bhardwaj, Aman and Qureshi, Abid and Raghava, G.P.S. and Kumar, Manoj (2016) ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis.Scientific reports, 6. p. 32713. ISSN 2045-2322

Gupta, Sudheer and Chaudhary, Kumardeep and Kumar, Rahul and Gautam, Ankur and Nanda, Jagpreet Singh and Dhanda, Sandeep Kumar and Brahmachari, Samir Kumar and Raghava, G.P.S. (2016) Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine. Scientific reports, 6. p. 23857. ISSN 2045-2322

H

Haque, Farazul and Alfatah, Md and Ganesan, K and Bhattacharyya, Mani Shankar (2016) Inhibitory Effect of Sophorolipid on Candida albicans Biofilm Formation and Hyphal Growth. Scientific reports, 6. p. 23575. ISSN 2045-2322

Honnavar, Prasanna and Chakrabarti, Arunaloke and Prasad, Ghandam S and Singh, Pankaj and Dogra, Sunil and Rudramurthy, Shivaprakash M (2016) β-Endorphin enhances the phospholipase activity of the dandruff causing fungi Malassezia globosa and Malassezia restricta. Medical mycology. ISSN 1460-2709

Honnavar, Prasanna and Prasad, Gandham S and Ghosh, Anup and Dogra, Sunil and Handa, Sanjeev and Rudramurthy, Shivaprakash M (2016) Malassezia arunalokei sp. nov., a Novel Yeast Species Isolated from Seborrheic Dermatitis Patients and Healthy Individuals from India. Journal of clinical microbiology, 54 (7). pp. 1826-34. ISSN 1098-660X

I

Ishaq, Mohammad and Ojha, Rani and Sharma, Kapil and Sharma, Gaurav and Singh, Shrawan K and Majumdar, Sekhar (2016)Functional inhibition of Hsp70 by Pifithrin-μ switches Gambogic acid induced caspase dependent cell death to caspase independent cell death in human bladder cancer cells. Biochimica et biophysica acta, 1863 (11). pp. 2560-2573. ISSN 0006-3002

K

Kachhap, Sangita and Priyadarshini, Pragya and Singh, Balvinder (2016) Molecular dynamics simulations show altered secondary structure of clawless in binary complex with DNA providing insights into aristaless-clawless-DNA ternary complex formation. Journal of biomolecular structure & dynamics. pp. 1-15. ISSN 1538-0254 (In Press)

Kaundal, Soni and Uttam, Manju and Thakur, Krishan Gopal (2016) Dual Role of a Biosynthetic Enzyme, CysK, in Contact Dependent Growth Inhibition in Bacteria. PloS one, 11 (7). e0159844. ISSN 1932-6203

Kaur, Gurmeet and Subramanian, Srikrishna (2016) Classification of the treble clef zinc finger: noteworthy lessons for structure and function evolution. Scientific reports, 6. p. 32070. ISSN 2045-2322

Kaur, Gurwinder and Kumar, Narender and Mual, Poonam and Kumar, Anand and Kumar, Rajendran Mathan and Mayilraj, Shanmugam (2016) Brachybacterium aquaticum sp. nov., a novel actinobacterium isolated from sea water. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Kaur, Gurwinder and Mual, Parveen and Kumar, Narender and Verma, Ashish and Kumar, Anand and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2016) Microbacterium aureliae sp. nov., a novel actinobacterium member of the genus Microbacterium isolated from Aurelia aurita, the moon Jelly fish. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Kaur, Karambir and Gupta, Amit Kumar and Rajput, Akanksha and Kumar, Manoj (2016) ge-CRISPR - An integrated pipeline for the prediction and analysis of sgRNAs genome editing efficiency for CRISPR/Cas system. Scientific reports, 6. p. 30870. ISSN 2045-2322

Kaur, Simerpreet and Rana, Vibhuti and Singh, Pooja and Trivedi, Garima and Anand, Shashi and Kaur, Amanpreet and Gupta, Pawan and Jain, Amita and Sharma, Charu (2016) Novel mutations conferring resistance to kanamycin in Mycobacterium tuberculosis clinical isolates from Northern India. Tuberculosis (Edinburgh, Scotland), 96. pp. 96-101. ISSN 1873-281X

Khan, Mohd Shoaib and Gupta, Amit Kumar and Kumar, Manoj (2016) ViralEpi v1.0: a high-throughput spectrum of viral epigenomic methylation profiles from diverse diseases. Epigenomics, 8 (1). pp. 67-75. ISSN 1750-192X

Khan, Nargis and Aqdas, Mohammad and Vidyarthi, Aurobind and Negi, Shikha and Pahari, Susanta and Agnihotri, Tapan and Agrewala, J N (2016) Triggering through NOD-2 Differentiates Bone Marrow Precursors to Dendritic Cells with Potent Bactericidal activity. Scientific reports, 6. p. 27263. ISSN 2045-2322

Khan, Nargis and Pahari, Susanta and Vidyarthi, Aurobind and Aqdas, Mohammad and Agrewala, Javed N (2016) Stimulation through CD40 and TLR-4 Is an Effective Host Directed Therapy against Mycobacterium tuberculosis. Frontiers in immunology, 7. p. 386.

Khan, Nargis and Vidyarthi, Aurobind and Amir, Mohammed and Mushtaq, Khurram and Agrewala, J N (2016) T cell Exhaustion in Tuberculosis: Pitfalls and Prospects. Critical reviews in microbiology. ISSN 1549-7828 (In Press)

Khan, Nargis and Vidyarthi, Aurobind and Javed, Shifa and Agrewala, J N (2016) Innate immunity holding the flanks until reinforced by adaptive immunity against Mycobacterium tuberculosis infection. Frontiers in Microbiology : Infectious disease. ISSN 1093-4715

Khan, Nargis and Vidyarthi, Aurobind and Nadeem, Sajid and Negi, Shikha and Nair, Girish and Agrewala, J N (2016) Alteration in the gut microbiota provokes susceptibility to tuberculosis. Frontiers in Immunology. (In Press)

Khan, Nargis and Vidyarthi, Aurobind and Pahari, Susanta and Negi, Shikha and Aqdas, Mohammad and Nadeem, Sajid and Agnihotri, Tapan and Agrewala, J N (2016) Signaling through NOD-2 and TLR-4 Bolsters the T cell Priming Capability of Dendritic cells by Inducing Autophagy. Scientific reports, 6. p. 19084. ISSN 2045-2322

Khatri, Indu and Sharma, Shailza and Ramya, T N C and Subramanian, Srikrishna (2016) Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics. PloS one, 11 (6). e0156745. ISSN 1932-6203

Krishnan, Ramya and Menon, Rahul R and Likhitha, . and Busse, Hans-Jürgen and Tanaka, Naoto and Krishnamurthi, Srinivasan and Rameshkumar, N (2016) Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice. Research in microbiology. ISSN 1769-7123 (In Press)

Krishnan, Ramya and Menon, Rahul Ravikumar and Tanaka, Naoto and Busse, Hans-Jürgen and Krishnamurthi, Srinivasan and Rameshkumar, Natarajan (2016) Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India. PloS one, 11 (3). e0150322. ISSN 1932-6203

Kumar, Saurav and Bagchi, Sudeshna and Prasad, E.Senthil and Sharma, Anupma and Kumar, Ritesh and Kaur, Rishemjit and Singh, Jagvir and Bhondekar, Amol P (2016) Bacteriorhodopsin-ZnO hybrid as a potential sensing element for low-temperature detection of ethanol vapour. Beilstein journal of nanotechnology, 7. pp. 501-10. ISSN 2190-4286

L

Leo, Vincent V and Passari, Ajit K and Joshi, J Beslin and Mishra, Vineet K and Uthandi, Sivakumar and Ramesh, N and Gupta, Vijai K and Saikia, Ratul and Sonawane, Vijay C and Singh, Bhim P (2016) A Novel Triculture System (CC3) for Simultaneous Enzyme Production and Hydrolysis of Common Grasses through Submerged Fermentation. Frontiers in microbiology, 7. p. 447. ISSN 1664-302X

M

Mahajan, Sahil and Saini, Ankita and Kalra, Rashi and Gupta, Pawan (2016) Frienemies of infection: A chronic case of host nuclear receptors acting as cohorts or combatants of infection. Critical reviews in microbiology, 42 (4). pp. 526-34. ISSN 1549-7828

Maheshwari, Neeraj and Kantipudi, Satish and Maheshwari, Anand and Arora, Kashika and Vandana, . and Kwatra, Neha and Sahni, Girish (2016) Amino-Terminal Fusion of Epidermal Growth Factor 4,5,6 Domains of Human Thrombomodulin on Streptokinase Confers Anti-Reocclusion Characteristics along with Plasmin-Mediated Clot Specificity. PloS one, 11 (3). e0150315. ISSN 1932-6203

Malhotra, Himanshu and Sheokand, Navdeep and Kumar, Santosh and Chauhan, Anoop S and Kumar, Manoj and Jakhar, Priyankaand Boradia, Vishant M and Raje, Chaaya I and Raje, Manoj (2016) Exosomes: Tunable Nano Vehicles for Macromolecular Delivery of Transferrin and Lactoferrin to Specific Intracellular Compartment. Journal of biomedical nanotechnology, 12 (5). pp. 1101-14. ISSN 1550-7033

Malhotra, Neha and Chakraborti, Pradip K (2016) Eukaryotic-Type Ser/Thr Protein Kinase Mediated Phosphorylation of Mycobacterial Phosphodiesterase Affects its Localization to the Cell Wall. Frontiers in microbiology, 7. p. 123. ISSN 1664-302X

Mandal, Santi M and Chakraborty, Dipjyoti and Dutta, Suhrid R and Ghosh, Ananta K and Pati, Bikas R and Korpole, Suresh and Paul, Debarati (2016) Induction of nodD Gene in a Betarhizobium Isolate, Cupriavidus sp. of Mimosa pudica, by Root Nodule Phenolic Acids. Current microbiology, 72 (6). pp. 733-7. ISSN 1432-0991

Mawlankar, Rahul and Thorat, Meghana N and Krishnamurthi, Srinivasan and Dastager, Syed G (2016) Bacillus cellulasensis sp. nov., isolated from marine sediment. Archives of microbiology, 198 (1). pp. 83-9. ISSN 1432-072X

Mishra, Pradeep and Kaur, Suneet and Sharma, Amar Nath and Jolly, R S (2016) Characterization of an Indole-3-Acetamide Hydrolase from Alcaligenes faecalis subsp. parafaecalis and Its Application in Efficient Preparation of Both Enantiomers of Chiral Building Block 2,3-Dihydro-1,4-Benzodioxin-2-Carboxylic Acid. PloS one, 11 (7). e0159009. ISSN 1932-6203

Mual, Poonam and Singh, Nitin Kumar and Verma, Ashish and Schumann, Peter and Krishnamurthi, Srinivasan and Dastager, Syedand Mayilraj, Shanmugam (2016) Reclassification of Bacillus isronensisShivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009. International journal of systematic and evolutionary microbiology, 66 (5). pp. 2113-20. ISSN 1466-5034

Muthu Krishnan, S (2016) Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach. Journal of theoretical biology, 409. pp. 27-37. ISSN 1095-8541

Mutreja, Ruchi and Jariyal, Monu and Pathania, Preeti and Sharma, Arunima and Sahoo, D K and Suri, C Raman (2016) Novel surface antigen based impedimetric immunosensor for detection of Salmonella typhimurium in water and juice samples. Biosensors & bioelectronics, 85. pp. 707-13. ISSN 1873-4235

N

Nallabelli, Nayudu and Patil, Prashant P and Pal, Vijay Kumar and Singh, Namrata and Jain, Ashish and Patil, Prabhu B and Grover, Vishakha and Korpole, Suresh (2016) Biochemical and genome sequence analyses of Megasphaera sp. strain DISK18 from dental plaque of a healthy individual reveals commensal lifestyle. Scientific reports, 6. p. 33665. ISSN 2045-2322

Nupur, L N U and Vats, Asheema and Dhanda, Sandeep Kumar and Raghava, G.P.S. and Pinnaka, Anil Kumar and Kumar, Ashwani(2016) ProCarDB: a database of bacterial carotenoids. BMC microbiology, 16. p. 96. ISSN 1471-2180

P

Pathak, Deepika and Bhat, Aadil Hussain and Sapehia, Vandana and Rai, Jagdish and Rao, Alka (2016) Biochemical evidence for relaxed substrate specificity of Nα-acetyltransferase (Rv3420c/rimI) of Mycobacterium tuberculosis. Scientific reports, 6. p. 28892. ISSN 2045-2322

Patil, Prashant P and Midha, Samriti and Kumar, Sanjeet and Patil, Prabhu B (2016) Genome Sequence of Type Strains of Genus Stenotrophomonas. Frontiers in microbiology, 7. p. 309. ISSN 1664-302X

Priyanka, Anu and Solanki, Vipul and Parkesh, Raman and Thakur, Krishan Gopal (2016) Crystal structure of the N-terminal domain of human SIRT7 reveals a three-helical domain architecture. Proteins, 84 (10). pp. 1558-63. ISSN 1097-0134

Q

Qureshi, Abid and Kaur, Gazaldeep and Kumar, Manoj (2016) AVCpred: an integrated web server for prediction and design of antiviral compounds. Chemical biology & drug design. ISSN 1747-0285

R

Rai, Pradeep K and Chodisetti, Sathi Babu and Nadeem, Sajid and Maurya, Sudeep K and Gowthaman, Uthaman and Zeng, Weiguang and Janmeja, Ashok Kumar and Jackson, David C and Agrewala, J N (2016) A novel therapeutic strategy of lipidated promiscuous peptide against Mycobacterium tuberculosis by eliciting Th1 and Th17 immunity of host. Scientific reports, 6. ISSN 2045-2322 (In Press)

Rajput, Akanksha and Kaur, Karambir and Kumar, Manoj (2016) SigMol: repertoire of quorum sensing signaling molecules in prokaryotes. Nucleic acids research, 44 (D1). D634-9. ISSN 1362-4962

Randhawa, Anmoldeep and Chawla, Srishti and Mondal, Alok K (2016) Functional dissection of HAMP domains in NIK1 ortholog from pathogenic yeast Candida lusitaniae. Gene, 577 (2). pp. 251-7. ISSN 1879-0038

Randhawa, Harmandeep Kaur and Gautam, Ankur and Sharma, Minakshi and Bhatia, Rakesh and Varshney, Grish C and Raghava, G.P.S. and Nandanwar, Hemraj (2016) Cell-penetrating peptide and antibiotic combination therapy: a potential alternative to combat drug resistance in methicillin-resistant Staphylococcus aureus. Applied microbiology and biotechnology, 100 (9). pp. 4073-4083. ISSN 1432-0614

S

Saini, Ankita and Mahajan, Sahil and Gupta, Pawan (2016) Nuclear receptor expression atlas in BMDCs: Nr4a2 restricts immunogenicity of BMDCs and impedes EAE. European journal of immunology, 46 (8). pp. 1842-53. ISSN 1521-4141

Sankhyan, Anurag and Sharma, Chandresh and Dutta, Durgashree and Sharma, Tarang and Chosdol, Kunzang and Wakita, Takajiand Watashi, Koichi and Awasthi, Amit and Acharya, Subrat K and Khanna, Navin and Tiwari, Ashutosh and Sinha, Subrata (2016)Inhibition of preS1-hepatocyte interaction by an array of recombinant human antibodies from naturally recovered individuals. Scientific reports, 6. p. 21240. ISSN 2045-2322

Satpute, Surekha K and Kulkarni, Gauri R and Banpurkar, Arun G and Banat, Ibrahim M and Mone, Nishigandha S and Patil, Rajendra H and Cameotra, Swaranjit Singh (2016) Biosurfactant/s from Lactobacilli species: Properties, challenges and potential biomedical applications. Journal of basic microbiology. ISSN 1521-4028

Sawhney, Pooja and Katare, Keya and Sahni, Girish (2016) PEGylation of Truncated Streptokinase Leads to Formulation of a Useful Drug with Ameliorated Attributes. PloS one, 11 (5). e0155831. ISSN 1932-6203

Selvaraj, MuthuKrishnan and Puri, Munish and Dikshit, Kanak L. and Lefevre, Christophe (2016) BacHbpred: Support Vector Machine Methods for the Prediction of Bacterial Hemoglobin-Like Proteins. Advances in Bioinformatics, 2016. pp. 1-11. ISSN 1687-8027

Sethi, Deepti and Mahajan, Sahil and Singh, Chaahat and Lama, Amrita and Hade, Mangesh Dattu and Gupta, Pawan and Dikshit, Kanak L (2016) Lipoprotein LprI of Mycobacterium tuberculosis Acts as a Lysozyme Inhibitor. The Journal of biological chemistry, 291 (6). pp. 2938-53. ISSN 1083-351X

Sharma, Astha and Prasad, E.Senthil and Chaturvedi, Harsh (2016) Photon induced separation of bio-nano hybrid complex based on carbon nanotubes and optically active bacteriorhodopsin. Optical Materials Express, 6 (4). p. 986. ISSN 2159-3930

Sharma, Gaurav and Khatri, Indu and Subramanian, Srikrishna (2016) Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T. Genome biology and evolution, 8 (8). pp. 2520-9. ISSN 1759-6653

Sharma, Gaurav and Narwani, Tarun and Subramanian, Srikrishna (2016) Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus. PloS one, 11 (2). e0148593. ISSN 1932-6203

Sharma, Kapil and Ishaq, Mohammad and Sharma, Gaurav and Khan, Mohammad Aslam and Dutta, Rajesh Kumar and Majumdar, Sekhar (2016) Pentoxifylline triggers autophagy via ER stress response that interferes with Pentoxifylline induced apoptosis in human melanoma cells. Biochemical pharmacology, 103 (1). pp. 17-28. ISSN 1873-2968

Sharma, Pankaj and Verma, Neha and Singh, Pradip Kumar and Korpole, Suresh and Ashish, . (2016) Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation. Scientific reports, 6. p. 22475. ISSN 2045-2322

Sheokand, Navdeep and Malhotra, Himanshu and Chauhan, Anoop Singh and Kumar, Manoj and Chaudhary, Surbhi and Patidar, Anil and Boradia, Vishant Mahendra and Raje, Chaaya Iyengar and Raje, Manoj (2016) Reverse overshot water-wheel retroendocytosis of Apo Transferrin extrudes cellular iron. Journal of cell science, 129. pp. 843-53. ISSN 1477-9137

Singh, Harinder and Raghava, G.P.S. (2016) BLAST-based structural annotation of protein residues using Protein Data Bank. Biology direct, 11 (1). p. 4. ISSN 1745-6150

Singh, Harinder and Srivastava, Hemant Kumar and Raghava, G.P.S. (2016) A web server for analysis, comparison and prediction of protein ligand binding sites. Biology direct, 11 (1). p. 14. ISSN 1745-6150

Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2016) SATPdb: a database of structurally annotated therapeutic peptides. Nucleic acids research, 44 (D1). D1119-26. ISSN 1362-4962

T

Thakur, Anamika and Rajput, Akanksha and Kumar, Manoj (2016) MSLVP: prediction of multiple subcellular localization of viral proteins using a support vector machine. Molecular bioSystems, 12 (8). pp. 2572-86. ISSN 1742-2051

Tomar, Rachana and Sharma, Pankaj and Srivastava, Ankit and Bansal, Saurabh and Kundu, Bishwajit and Ashish, . (2016)Structural and functional insights into an archaeal L-asparaginase obtained through the linker-less assembly of constituent domains. Corrigendum. Acta crystallographica. Section D, Structural biology, 72 (Pt 1). p. 180. ISSN 2059-7983

Trivedi, Abhishek and Mavi, Parminder Singh and Bhatt, Deepak and Kumar, Ashwani (2016) Thiol reductive stress induces cellulose-anchored biofilm formation in Mycobacterium tuberculosis. Nature communications, 7. p. 11392. ISSN 2041-1723

Tuteja, Satish K and Chen, Rui and Kukkar, Manil and Song, Chung Kil and Mutreja, Ruchi and Singh, Suman and Paul, Ashok K and Lee, Haiwon and Kim, Ki-Hyun and Deep, Akash and Suri, C Raman (2016) A label-free electrochemical immunosensor for the detection of cardiac marker using graphene quantum dots (GQDs). Biosensors & bioelectronics, 86. pp. 548-56. ISSN 1873-4235

W

Wagner, Mark C and Myslinski, Jered and Pratap, Shiv and Flores, Brittany and Rhodes, George and Campos-Bilderback, Silvia Band Sandoval, Ruben M and Kumar, Sudhanshu and Patel, Monika and Ashish, . and Molitoris, Bruce A (2016) Mechanism of increased clearance of glycated albumin by proximal tubule cells. American journal of physiology. Renal physiology, 310 (10). F1089-102. ISSN 1522-1466

Y

Yadav, Ghanshyam S and Ravala, Sandeep K and Malhotra, Neha and Chakraborti, Pradip K (2016) Phosphorylation Modulates Catalytic Activity of Mycobacterial Sirtuins. Frontiers in microbiology, 7. p. 677. ISSN 1664-302X