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Research Publications
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प्रैस में (IN PRESS)

 

2010 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000

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IN PRESS

 

 

Dhanjal, S.; Kaur, I.;  Korpole, S.;  Schuman, P.;Cameotra, S.S.;  Pukall, R.; Klenk, H-P. and Mayilraj, S.
Agrococcus carbonis sp. nov., a novel species of the genus Agrococcus isolated from coal mine soil sample.  Int. J. Syst. Evol. Microbiol.

 

 

Sri Krishna, S. and Aravind, L.
The bridge-region of the Ku superfamily is an atypical zinc ribbon domain. J. Structural Biology.

 

 

Wangoo, N.; Kaushal, J.; Bhasin, K.K. and Suri, C.R.
Zeta potential based colorimetric immunoassay for the direct detection of diabetic marker HbA1c using gold nanoprobes. Chem. Comm.

 

Manickam, N.; Pathak, A.; Saini, H.; Mayilraj,S. and Rishi, S.
Metabolic Profiles and Phylogenetic Diversity of Microbial Communities from Chlorinated Pesticides Contaminated Sites of Different Geographical Habitats of India. Journal of Applied Microbiology

 

Pal, K.; Kumar, S.; Sharma, S.; Garg, S.K.; Mohammad, S.Alam; Xu, H.E.; Agrawal, P. and Swaminathan, K.
Crystal structure of full length mycobacterium tuberculosis H37rv glycogen branching enzyme: insights of n-terminal β-Sandwich in substrate specificity and enzymatic activity. J. Biol. Chem.

 

Dave, S.; Mahajan, S.; Chandra, V.; Dkhar, H.K.; Sambhavi And Gupta, P.
Specific molten globule conformation of stem bromelain at alkaline pH. Arch. Biochem. Biophy.

 

 

Soniya Dhanjal, Arunachalam Ruckmani, Swaranjit Singh Cameotra, Rüdiger Pukall, Hans-Peter Klenk, and Shanmugam Mayilraj
Yaniella fodinae sp. nov., a novel member of the genus Yaniella isolated from coal mine sample. Int J Syst Evol Microbiol (2010)


Priyanka Sharma, Adity Chopra, Swaranjit Singh Cameotra and C. Raman Suri.
Transformation capability of bacterial strain Micrococcus sp. PS-1 for the enhanced biodegradation of phenyl urea herbicide diuron. Biodegradation

 

 

Dhanjal, S.; Ruckmani, A.; Cameotra, S.S.; Pukall,R.; Klenk, H-P and Mayilraj, S.

Yaniella fodinae sp. nov., a novel member of the genus Yaniella isolated from coal mine sample. Int. J. Syst. Evol. Microbiol

 

 

Das, A.; Pathak, A.; Sinha, A.; Datt, M.; Singh, B.; Karthikeyan, S and Sarkar, D.

A single amino acid substitution in the C terminus of PhoP determines DNA-binding specificity of the virulence-associated response regulator from Mycobacterium tuberculosis. J. Mol. Biol. 

 

 

Luthra-Guptasarma, M.,and Guptasarma, P.
Metal-catalyzed proteolysis, conformational antigenicity, photosensitized oxidation and electrical dysfunction explain the pathogenicity of protein aggregates. Medical Hypotheses.

 

 

Gowthaman, U.; Sathibabu, C. and Agrewala, J.N.
Evaluation of Different Generic in silico Methods for Predicting HLA class I Binding Peptide Vaccine Candidates using a Reverse Approach. Amino Acids.

 

 

Kumar, A. and Bachhawat, A.K
OXP1/YKL215c encodes an ATP-dependant 5-oxoprolinase in Saccharomyces cerevisiae: Functional Characterization, Domain structure and Identification of actin–like ATP-binding motifs in eukaryotic 5-oxoprolinases. FEMS Yeast Res.

 

 

Ansari, H. R. and Raghava, G. P. S.
Identification of NAD interacting residues in proteins.  BMC Bioinformatics.

 

 

Rashid, M. and Raghava, G. P. S.
A simple approach for predicting protein-protein interactions. Current Protein & Peptide Science.

 

 

Rajiv kumar Ranjan, Kammara Rajagopal
Efficient ligation and cloning of DNA fragments with two base pair Overhangs. Anal. Biochem.

 

 

Tice, H.,  Mayilraj, S. et al.
Complete genome sequence of Nakamurella multipartita type strain (Y-104T). Standards in Genomic Sciences.


 

Dave, S.; Dkhar, H.K.; Singh, M.P.; Gupta, G., Chandra, V.; Mahajan, S. and Gupta Pawan
Hexafluoroisopropanol induced helix-sheet transition of stem bromelain: Correlation to function. Int. J. Biochem. Cell. Biol.


Patnaik P.R.
Hybrid models for biological reactors: Performance and possibilities. Intl. Rev. Chem. Eng.


Patnaik P.R.
Stability analysis of Escherichia coli chemotaxis distorted by external noise: A comparision of algorithmic and neural filters. Intl. J. Math. Models Math. Appl. Sci.


Patnaik P.R.
A feasibility analysis of bacterial chemotaxis under the influence of external noise.  J. Biochem. Technol.


Chauhan, A., Islam,.Z; Jain, R.K.  and Karthikeyan, S
Expression, purification, crystallization and preliminary X-ray analysis of maleylacetate reductase from Burkholderia sp. strain SJ-98. Acta Crystallographica


Ranjana Tripathi, NaoremSanta Singh, Chetna Dureja, Swati Haldar, Alok K Mondal, and Saumya Raychaudhuri
VopF, a type III effector protein from a non-O1, non-O139 V. cholerae strain demonstrates toxicity in a Saccharomyces cerevisiae model. J. Med. Microbiol.


Chris Munk, Alla Lapidus, Alex Copeland, Marlen Jando, Shanmugam Mayilraj, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin, Patrick Chain, Sam Pitluck, Markus Göker, Galina Ovchinikova, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, and Hans-Peter Klenk
Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T) Standards in Genomic Sciences.


Kaur, J. and Bachhawat, A.K.
Q222 in transmembrane domain 4 and Q526 in transmembrane domain 9 are critical for substrate recognition in the yeast high affinity glutathione transporter, Hgt1p. J. Biol. Chem.


Puria, R.; Mannan, M.A.; Chopra-Dewasthaly, R. and Ganesan, K.
Critical role for RPI1 in stress tolerance of yeast during ethanolic fermentation., FEMS Yeast Res.


Probst, A.; Vaishampayan, P.; Ghosh, A.; Osman, S.; McDowall, A.; Krishnamurthi, S.; Ruckmani, A.; Mayilraj, S. and Venkateswaran, K.
Bacillus horneckiae sp. nov., isolated from a clean room where the Phoenix spacecraft was assembled. Int. J. Syst. Evol. Microbiol.


Pawan Gupta; Ping-Ching Ho; Sung, Gil Ha; Yi-Wei Lin and Li-Na Wei
HDAC3 as a molecular chaperone for shuttling phosphorylated TR2 to PML: A novel deacetylase activity-independent function of HDAC3. PLoS ONE


Singh, G., Thakur, M., Chakraborti, P.K. and Dey, C.S.
Evidence for the presence of R250G mutation at the ATPase domain of topoisomerase II in an arsenite-resistant Leishmania donovani exhibiting a differential drug inhibition profile. Int. J. Antimicrob. Agents.


Loveena, R.; Gahlot, S.; Kathania, M. and Majumdar, S.
Pentoxifylline induces apoptosis in vitro in cutaneous T cell lymphoma (HuT-78) and enhances FasL mediated killing by upregulating Fas expression. Biochem. Pharmacol


Sethi, D.; Garg, A. and Raghava, G.P.S.
DPROT: prediction of disordered proteins using evolutionary information. Amino Acids.


Ghosh, A.; Paknikar, K.M. and Jain, R.K.
Isolation and characterization of selenite- and selenate- tolerant microorganisms from selenium-contaminated sites. World J. Microbial. Biotechnol.


Sinha, A.; Gupta, S.; Bhutani, S.; Pathak, A. and Sarkar, D.
PhoP-PhoP interaction on adjacent PhoP binding sites is influenced by protein phosphorylation. J. Bacteriol.


Kumar, M., Gromiha, M.M. and Raghava, G.P.S.
Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins: Structure, Function and Bioinformatics.


Chakraborti, D; Basu, J.M.; Sen, Pradip; Sundar, S. and Roy, S.
Human placental extract offers protection against pentavalent antimonial-sensitive and .resistant experimental visceral leishmaniasis: a pilot study for phase I clinical trial. Annals of Tropical Medicine and Research.

 
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PUBLICATIONS DURING 2010

 

Dhanjal, S. and Cameotra, S.S.
Aerobic biogenesis of selenium nanospheres by Bacillus cereus isolated from coalmine soil. Microbial Cell Factories, 9:52, 2010. 

 

 

Dave, S.; Mahajan, S.; Chandra, V.; Dkhar, H.K.; Sambhavi and Gupta, P.
Specific molten globule conformation of stem bromelain at alkaline pH. Arch. Biochem. Biophy., 499, 26-31, 2010. 

 

 

Haldar, A.K., Yadav, V.; Singhal, E.; Bisht, K.K.; Singh, A.; Bhaumik, S.; Basu, R.; Sen, Pradip* and Roy, Syamal
Leishmania donovani isolates with antimony-resistant but not -sensitive phenotype inhibit sodium antimony Gluconate-Induced Dendritic cell activation. PLoS Pathogens, 6(5), 1-21, e1000907, 2010.

 

Pratibha, J., Amandeep, K., Shenoy, B.D. and Bhat, D.J.
Caliciopsis indica sp. nov. from India. Mycosphere, 1, 65–72, 2010.

 

Dave, S.; Dkhar, H.K.; Singh, M.P.; Gupta, G.; Chandra, V.; Mahajan, S. And Gupta, P.
Hexafluoroisopropanol-induced helix-sheet transition of stem bromelain: Correlation to function. Int. J. Biochem. Cell Biol., 42, 938-947, 2010. 

 

 

Meena, Netrapal; Kaur, Harsimran and Mondal, A. K.
Interactions among HAMP repeats act as an osmosensing molecular switch in a group III hybrid histidine kinase. J. Biol Chem 2010, 285,12121–12132.

 

 

Mathur, C.; Prakash, R.;  Ali, A.;  Kaur, J.; Cameotra, S.S.  and N. Prakash, T.
Emulsification and Transesterification of Oil by a Soilborne Fungus, Syncephalastrum racemosum.. Defence Science Journal
2010, 60, 251-254.

 

 

Kapoor, D.; Singh, B.; Karthikeyan, S. and Guptasarma, P.
A functional comparison of the TET aminopeptidases of P. furiosus and B. subtilis with a protein-engineered variant recombining the former's structure with the latter's active site. Enzyme Microb. Tech. 46, 1-8, 2010

 

 

Kumar, A. and Bachhawat, A.K.  
Is a futile cycle, formed between two ATP-dependant γ-glutamyl cycle enzymes,
γ-glutamyl cysteine synthetase and 5-oxoprolinase, the cause of cellular ATP depletion seen in nephrotic cystinosis? J. Biosciences ,35, 21-25, 2010.

 

 

Garg, A., Tewari, R. and Raghava, G. P. S.
KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials.  BMC Bioinformatics, 11:125, 2010.

 

 

Singla, D., Sharma, A., Kaur, J., Panwar, B. and Raghava, G. P. S.
BIAdb: a curated database of benzylisoquinoline alkaloids. BMC Pharmacology, 10, 4, 2010.

 

 

Lata, S., Mishra, N.K. and Raghava, G. P. S.
AntiBP2: Improved version of antibacterial peptide prediction. BMC Bioinformatics, 11:S19, 2010.

 

 

Mishra, N.K. and Raghava, G. P. S.
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information. BMC Bioinformatics, 11:S48, 2010.

 

 

Garg, A., Tewari, R. and Raghava, G. P. S.
Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis. BMC Bioinformatics, 11:S53, 2010.

 

 

Chaudhary N, Mahajan L, Madan T, Kumar A, Raghava, G. P. S., Katti SB, Haq W and Sarma PU.
Prophylactic and Therapeutic Potential of Asp f1 Epitopes in Naiive and Sensitized BALB/c Mice. Immune Netw. 9, 179-91, 2010.

 

 

Tripathi, R.; Singh, N.S.; Dureja, C.; Haldar, S.; Mondal, A.K. and Raychaudhuri, S.
VopF, a type III effector protein from a non-O1, non-O139 V. cholerae strain demonstrates toxicity in a Saccharomyces cerevisiae model. J. Med. Microbiol., 59, 17-24, 2010.

 


Ashish; Solanki, A.K.; Boone, C.D. and Krueger, J.K.
Global structure of HIV-1 neutralizing antibody IgG1 b12 is asymmetric. Biochem. Biophy.Res. Comm., 391, 947-951, 2010.

 


Hadi Abd; Valeru, S.P.; Sami, S.M.; Saeed, A. and Raychaudhuri, S.
Interaction between Vibrio mimicus and Acanthamoeba castellanii (p ) Gunnar Sandström. Environ Microbiol Reports, (Online: DOI: 10.1111/j.1758-2229.2009.00129.x)

 

 

Ansari, H.R.; Flower, D.R. and Raghava, G.P.S.
AntigenDB: an immunoinformatics database of pathogen antigens. Nucleic Acids Res., 38, D847-853, 2010.

 


Cameotra, S.S.
Biosurfactant-enhanced bioremediation of hydrophobic pollutants. PAC, IUPAC 82(1): 97-116,  2010.

 
 
Sengar, K.P.S.
Building a Digital Institutional Repository Service (DIRS): IMTECH (CSIR) Initiative. Proceedings of the 3rd International Conference on Digital Libraries (ICDL)-2010. Vol.1, Page no. 600-605.
 
 
 
Cameotra,S.S.
Geographical Indications. CSIR NEWS Progress, Promise and Prospects,60, 5-6, 2010
 
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PUBLICATIONS DURING 2009

 

Newcombe, D.; Dekas, A..; Mayilraj, S. and Venkateswaran, K.
Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol; 59, 2015-2019, 2009.

 


Fazlurrahman, F.; Batra, M.; Pandey, J.; Suri, C.R. and Jain R.K.
Isolation and characterization of an atrazine degrading Rhodococcus sp. strain MB-P1 from contaminated soil. Lett. Appl. Microbial., 49, 721-729, 2009.

 

 

Chauhan, J.S.; Mishra, N.K. and Raghava, G.P.S.
Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinformatics.10, 434, 2009.


 

Ahmed, F.; Ansari, H.R. and Raghava, G.P.S..
Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinformatics,10, 105, 2009.

 

 

Gowthaman, U. and  Agrewala, J.N.
In silico methods for predicting T-cell epitopes: Dr Jekyll or Mr Hyde? Expert Rev Proteomics. 6, 527-537, 2009.

 

 

Rashid, M.; Singla, D.; Sharma, A.; Kumar, M. and Raghava, G.P.S.
Hmrbase: a database of hormones and their receptors. BMC Genomics.10, 307, 2009.

 

 

Kapoor, D.; Singh, B.; Subramanian, K. and Guptasarma. P.
Creation of a new eye lens crystallin (Gambeta) through structure-guided mutagenic grafting of the surface of betaB2 crystallin onto the hydrophobic core of gammaB crystallin. FEBS J., ;276, 3341-3353, 2009.

 

 

Chandrayan, S.K. and Guptasarma, P.
Attenuation of ionic interactions profoundly lowers the kinetic thermal stability of Pyrococcus furiosus triosephosphate isomerase. Biochim. Biophys. Acta., 1794, 905-912, 2009.

 

 

Kaur, J.; Srikanth, C.V., and Bachhawat, A.K.
Differential roles played by the native cysteine residues of the yeast glutathione transporter, Hgt1p. FEMS Yeast Res., 9, 849-866, 2009.

 

 

Gupta, S.; Pathak, A.; Sinha, A. and Sarkar, D.
Mycobacterium tuberculosis PhoP recognizes two adjacent direct-repeat sequences to form head-to-head dimmers. J. Bacteriol., 9, 7466-7476, 2009. 

 

 

Ho P.C.; Lin, Y.W.; Tsui, Y.C.; Gupta, P.; Wei, L.N.
A Negative Regulatory Pathway of GLUT4 Trafficking in Adipocyte: New Function of RIP140 in the Cytoplasm via AS160. Cell Metab.,  10, 516-523, 2009. 

 

 

Aneja, R.; Datt, M.; Singh, B.; Kumar, S. and Sahni, G.
Identification of a new exosite involved in catalytic turnover by the streptokinase-plasmin activator complex during human plasminogen activation. J. Biol. Chem., 284, 32642-32650, 2009.


Arora, P.K.;  Kumar, M.; Chauhan, A.; Ragava G.P. and Jain. R.K.
OxDBase: a database of oxygenases involved in biodegradation. BMC Res Notes. 2, 67-69, 2009.


Rajpara, N., Patel, A.;Tiwari, N.; bahuguna, J.; Antony, A.; Choudhury, I.; Ghosh, A.; Jain, R.K.; Ghosh, A. and   Bhardwaj, A.K.
Mechanism of drug resitance in a clinical isolate of Vibrio fluvialis: involvement of multiple plasmid and integrons. Int. J.  Antimicrob. Agents. 34, 220-225, 2009.


Kalia, S.B.; Kaushal, G.; Kumar, M.; Cameotra, S.S.; Sharma, A.; Verma, M.L. and Kanwar, S.S.
Antimicrobial and toxicological studies of some metal complexes of 4- methylpiperazine-1-carbodithioate and phenanthroline mixed ligands. Brazilian Journal of Microbiology. 40, 916-922, 2009.


Kaur, H.; Kumar, C.; Junot, C.; Toledano, M. and Bachhawat, A.K.
Dug1p is a Cys-Gly peptidase of the gamma -glutamyl cycle of Saccharomyces cerevisiae, and represents a novel family of Cys-Gly peptidases. J. Biol. Chem., 284,14493-14502, 2009.


Goyal, D.; Sahni, G. and Sahoo, D.K.
Enhanced production of recombinant streptokinase in Escherichia coli using fed-batch cultivation. Bioresource Technol., 100, 4468-4474, 2009.


Mannan, M.A.; Sharma, S. and Ganesan, K.
Total RNA isolation from recalcitrant yeast cells. Anal. Biochem.389, 77-79, 2009


Nangia, Y.; Wangoo, N.; Goyal, N.; Shekhawat, G. and Suri, C.R.
A novel bacterial isolate stenotrophomonas maltophilia as living factory for synthesis of gold nanoparticles. Microbial. Cell Factories, 8, 39, 2009.


Newcombe, D.; Dekas, A..; Mayilraj, S. and Venkateswaran, K.
Bacillus canaveralius sp. nov., an alkali-tolerant bacterium isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol; 59, 2015 . 2019, 2009.


Land, M.; Lapidus, A.; Mayilraj, S.; Chen, F.; Copeland, A.; Del Rio, T.G.; Nolan, M.; Lucas, S.; Tice, H.; Cheng, J.; Chertkov, O; Bruce, D; Goodwin, L; Pitluck, S.; Rohde, M.; Göker, M; Pati, A.; Ivanova, N.; Mavromatis, K; Chen, A; Palaniappan, K.; Hauser, L.; Chang, Y.; Jeffries, C.C.; Brettin, T.; Detter, G.C.; Han, C.; Chain, P.; Tindall, B.J.; Bristow, J.; Eisen, J.A.; Markowitz, V.; Hugenholtz, P.; Kyrpides, N.C. and Hans-Peter Klenk
Complete genome sequence of Actinosynnema mirum type strain (101T). Standards in Genomic Science, 1, 46-53, 2009.


Kumaran, S.; Hankuil, Y.; Krishnan, H.B. and Joseph, M.J.
Assembly of the cysteine synthase complex and the regulatory role of protein-protein interactions. J. Biol. Chem., 284, 10268-10275, 2009.


Cameotra, S.S. and Singh, P.
Synthesis of Rhamnolipid Biosurfactant and mode of Hexadecane Uptake by a Pseudomonas sp. Microb. Cell Fact., 8:16, 2009.


Kaundal, R. and Raghava, G.P.S.
RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics, 9, 2324-2342, 2009.


Mayilraj, S.; Kaksonen, A.H.; Cord-Ruwisch, R.; Schumann, P.; Spröer, C.; Tindall, B.J. and Spring, S.
Desulfonauticus autotrophicus sp. nov., a novel thermophilic sulfate-reducing bacterium isolated from oil-production water and emended description of the genus Desulfonauticus. Extremophiles, 13, 247-255, 2009.


Krishnamurthi, S.; Bhattacharya, A.; Mayilraj, S.; Saha, P.; Schumann, P. and Chakrabarti, T.
Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov. Int. J. Syst. Evol. Microbiol., 59, 1364-1370, 2009.


Krishnamurthi, S.; Chakrabarti, T. and Stackebrandt, E.
Re-examination of taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to a new genus Solibacillus gen nov. as Solibacillus silvestris comb. nov. Int. J. Syst. Evol. Microbiol., 59, 1054-1058, 2009.


Pandey, J.; Chauhan, A. and Jain R.K.
Integrative approaches for assessing ecological sustainability of in situ bioremediation. FEMS Microbial. Rev., 32, 324-375, 2009.


Patnaik, P.R.
Cognitive optimization of microbial PHB production in an optimally dispersed bioreactor by single and mixed cultures. Bioprocess Biosyst. Eng., 32, 557-568, 2009.


Dubey, R.N.; Nakwal, N.; Bisht, K.K.; Saini, A.; Haldar, S. and Singh, J.
Interaction of APC/C-E3 ligase with Swi6/HP1 and Clr4/Suv39 in heterochromatin assembly in fission yeast. J. Biol. Chem., 284, 7165-7176, 2009.


Chatterjee, S.; Barbora, L.; Cameotra, S.S. and Goswami, P
Silk-fiber immobilized lipase-catalysed hydrolysis of emulsified sunflower oil. Appl. Biochem. Biotechnol., 157, 593-600, 2009.


Moon, L.S.; Jolly, R.S.; Kasetti, Y. and Bharatam, P.V.
A new chiral shift reagent for the determination of enantiomeric excess and absolute configuration in cyanohydrins. Chem. Commun. (Camb)., 7, 1067-1069, 2009.


Pawan Gupta; Ping-Ching Ho; Sung, Gil Ha; Yi-Wei Lin and Li-Na Wei
HDAC3 as a molecular chaperone for shuttling phosphorylated TR2 to PML: A novel deacetylase activity-independent function of HDAC3. PLoS ONE, 4, e4363, 2009.


Patnaik, P.R.
A hybrid simulator for improved filtering of noise from oscillating microbial fermentations. Biochem. Eng. J., 39, 389-396, 2008.


Rishi, L.; Gahlot, S.; Kathania, M. and Majumdar, S.
Pentoxifylline induces apoptosis in vitro in cutaneous T cell lymphoma (HuT-78) and enhances FasL mediated killing by upregulating Fas expression. Biochem Pharmacol., 77, 30-45. 2009.


Kaur J, Bachhawat AK.
A modified Western blot protocol for enhanced sensitivity in the detection of a membrane protein. Anal. Biochem., 384, 348-349, 2009.


Patnaik, P.R.
Transient response analysis of the eukaryotic chemosensory system to intra-cellular fluctuations. J. Bioinform. Comput. Biol., 7, 93-105, 2009.


Kumar, M. and Raghava, G.P.S.
Prediction of Nuclear Proteins using SVM and HMM Models. BMC Bioinformatics. 10, 22, 2009


Garg, S.K.; Alam, M.S.; Bajpai, R.;Radhakishan, K.V. and Agrawal,P.
Redox Biology of Mycobacterium tuberculosis H37Rv: protein-protein interaction between GlgB and WhiB1 involves exchange of thiol-disulfide. BMC Biochem, 10, 1, 2009.


Singh, P.; Dhanjal, S.; Singh, K.V.; Suri, C.R. and Cameotra, S.S.
Monitoring atrazine uptake by a new fluorometric assay. Current Science. 96, 268-271, 2009.


Singh, G.; Thakur, M.; Chakraborti, P.K. and Dey, C.S.
Evidence for the presence of R250G mutation at the ATPase domain of topoisomerase II in an arsenite-resistant Leishmania donovani exhibiting a differential drug inhibition profile. Int. J. Antimicrob. Agents. 33, 80-85, 2009.


Alam, M.S.; Garg, S.K. and Agrawal, P.
Studies on structural and functional divergence among seven WhiB proteins of Mycobacterium tuberculosis H37Rv. FEBS Journal. 276, 76-93, 2009.


Minhas, A.; Biswas, D. and Mondal, A.K.
Development of host and vector for high efficiency transformation and gene disruption in Debaryomyces hansenii. FEMS Yeast Res., 9, 95-102, 2009.

 
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PUBLICATIONS DURING 2008


  • Saluja, P. and Prasad, G.S.
    Candida ruelliae sp. nov., a novel yeast species isolated from flowers of Ruellia sp. (Acanthaceae). FEMS Yeast Res., 8, 660-666, 2008.


  • Thakur, A.; Kaur, J. and Bachhawat, A.K.
    Pgt1, a glutathione transporter from the fission yeast Schizosaccharomyces pombe. FEMS Yeast Res., 8, 916-929, 2008.


  • Kaur, R.; Ahuja, S.; Anand, A.; Singh, B.; Stark, B.C.; Webster, D.A. and Dikshit, K.L.
    Functional implications of the proximal site hydrogen bonding network in Vitreoscilla hemoglobin (VHb): role of Tyr95 (G5) and Tyr126 (H12). FEBS Lett., 582, 3494-3500, 2008.


  • Sharm, M.K.; Jani, D.; Thungapathra, M.; Gautam, J.K.; Meena, L.S.; Singh, Y.; Ghosh, A.; Tyagi, A.K. and Sharma, A.K.
    Expression of accessory colonization factor subunit A (ACFA) of Vibrio cholerae and ACFA fused to cholera toxin B subunit in transgenic tomato (Solanum lycopersicum). J. Biotechnol., 135, 22-27, 2008.


  • Kumar, M.; Gromiha, A.M. and Raghava, G.P.S.
    Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins-Structure Function And Bioinformatics, 71, 189-194, 2008.


  • Sharma, M.K.; Singh, N.K.; Jani, D.; Sisodia, R.; Thungapathra, M.; Gautam, J.K.; Meena, L.S.; Singh, Y.; Ghosh, A.; Tyagi, A.K. and Sharma, A.K.
    Expression of toxin co-regulated pilus subunit A (TCPA) of Vibrio cholerae and its immunogenic epitopes fused to cholera toxin B subunit in transgenic tomato (Solanum lycopersicum). Plant Cell Rep., 27, 307-318, 2008.


  • Cameotra, S.S. and Singh, P.
    Bioremediation of oil sludge using crude biosurfactants. Int. Biodeterioration & Biodegradation., 62, 274-280, 2008.


  • Jhamb, K.; Jawed, A. and Sahoo, D.K.
    Immobilized chaperones: A productive alternative to refolding of bacterial inclusion body proteins. Process Biochem., 43, 587-597,2008.


  • Guptasarma, P.
    Solution-state characteristics of the ultraviolet A-induced visible fluorescence from proteins. Arch Biochem Biophys., 478, 127-129, 2008.


  • Kapoor, D.; Kumar, V.; Chandrayan, S.K.; Ahmed, S.; Sharma, S.; Datt, M.; Singh, B.; Karthikeyan, S. and Guptasarma, P.
    Replacement of the active surface of a thermophile protein by that of a homologous mesophile protein through structure-guided 'protein surface grafting' Biochim. Biophys. Acta., 1784,
    1771-1776, 2008. .


  • Gandhi, S.; Sharma, P.; Capalash, N.; Verma, R.S. and Suri, C.R.
    Group-selective antibodies based fluorescence immunoassay for monitoring opiate drug heroin and its metabolites. Anal. Bioanal. Chem., 392, 215-222, 2008.


  • Aggarwal, M.; Radha Kishan, K.V.and Mondal, A.K.
    Creation of salt-insensitive 3'(2'), 5'-bisphosphate nucleotidase by modelling and mutagenesis approach. Arch. Biochem. Biophys., 469, 174-183, 2008.


  • Kush, A. and Raghava, G.P.S.
    AC2Dgel: Analysis and Comparison of 2D gels. Journal of Proteomics & Bioinformatics, 1, 43-46, 2008.


  • Shanmugam, V.; Sharma, V. and Ananthapadmanaban
    Genetic relatedness of trichoderma isolates antagonistic against fusarium oxysporum f.sp. dianthi Folia Microbial., 53, 130-138, 2008.
    inflicting carnation wilt.


  • Krishnamurthi, S. and Chakrabarti, T.
    Proposal for transfer of Pelagibacillus goriensis Kim et al. 2007 to the genus Terribacillus as Terribacillus goriensis comb. nov. Int. J. Syst. Evol. Microbiol. 58, 2287-2291, 2008.


  • Sethi, D.; Garg, A. and Raghava, G.P.S.
    DPROT: prediction of disordered proteins using evolutionary information. Amino Acids. 35,
    599-605, 2008.


  • Kapoor, D.; Kumar, V.; Chandrayan, S.K.; Ahmed, S.; Sharma, S.; Datt, M.; Singh, B.; Karthikeyan, S. and Guptasarma, P.
    Replacement of the active surface of a thermophile protein by that of a homologous mesophile protein through structure-guided 'protein surface grafting' Biochim. Biophys. Acta. 1784,
    1771-1776, 2008.


  • Gandhi, S.; Sharma, P.; Capalash, N.; Verma, R.S. and Suri, C.R.
    Group-selective antibodies based fluorescence immunoassay for monitoring opiate drug heroin and its metabolites. Anal. Bioanal. Chem. 392, 215-222, 2008.


  • Saxena, R.; Karthikeyan, S.; Datt, M.; Singh, B. and Chakraborti, P. K.
    Three consecutive arginines are important for the mycobacterial peptide deformylase enzyme activity. J. Biol. Chem. 283, 23754-23764, 2008.


  • Thakur, M. and Chakraborti, P.K.
    Ability of PknA, a mycobacterial eukaryotic-type serine/threonine kinase to transphosphorylate MurD, a ligase involved in the process of peptidoglycan biosynthesis. Biochem. J. 415, 27-33, 2008.


  • Alam, M. S. and Agrawal, P.
    Matrix-assisted refolding and redox properties of WhiB3/Rv3416 of Mycobacterium tuberculosis H37Rv. Protein Expr. Purif. 61, 83-91, 2008.


  • Kumar, M.; Thakur, V. and Raghava, G.P.S.
    COPid: composition based protein identification. In Silico Biol. 8, 121-128, 2008.


  • Dhiman, R.; Kathania, M.; Raje, M. and Majumdar, S.
    Inhibition of bfl-1/A1 by siRNA inhibits mycobacterial growth in THP-1 cells by enhancing phagosomal acidification. Biochim Biophys Acta. 1780, 733-42, 2008.


  • Aggarwal, M.; Radha Kishan, K.V.and Mondal, A.K.
    Creation of salt-insensitive 3'(2'), 5'-bisphosphate nucleotidase by modelling and mutagenesis approach. Arch. Biochem. Biophy. 469, 174-83, 2008.


  • Sharma, S. and Guptasarma, P.
    Evidence of Native-like Substructure(s) in Polypeptide Chain of Carbonic Anhydrase Deposited into Insoluble Aggregates During Thermal Unfolding. Protein J. 27, 50-58.


  • Garg, A. and Raghava, G.P.S.
    ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins. BMC Bioinformatics, 9, 503, 2008.


  • *Cameotra, Swaranjit Singh and Singh, Pooja
    Bioremediation of oil sludge using biosurfactants. Int. Biodeterio. Biodegradation 62: 274-280, 2008


  • Swaranjit Singh Cameotra
    Biosurfactant-enhanced bioremediation of hydrophobic pollutants. J. Biotechnol. 136, 678, 2008


  • Pawaria, S.; Lama, A.; Raje, M. and Dikshit, K.L.
    Responses of Mycobacterium tuberculosis hemoglobin promoters to in vitro and in vivo growth conditions. Appl. Environ. Microbiol.,74, 3512-3522, 2008.


  • Patnaik, P.R.
    Response coefficient analysis of a fed-batch bioreactor to dissolved oxygen perturbation in complementary cultures during PHB production. J. Biol. Eng., 2, 4, 2008.


  • Bisht, K. K.; Arora, S.; Ahmed, S. and Singh, Jagmohan
    Role of heterochromatin in suppressing subtelomeric recombination in Fission yeast. Yeast, 25, 537-548, 2008.


  • Yadav, S.; Datt, M.; Singh, B.; and Sahni, G. Role of the 88-97 loop in plasminogen activation by streptokinase probed through site-specific mutagenesis. Biochim. Biophys. Acta., 1784, 1310-1318, 2008.


  • Sharma, S. and Guptasarma, P.
    Evidence of Native-like Substructure(s) in Polypeptide Chain of Carbonic Anhydrase Deposited into Insoluble Aggregates During Thermal Unfolding. Protein J. 27, 50-58, 2008.


  • Dongre M, Tripathi R, Jain V, Raychaudhuri S.
    Functional independence of a variant LuxOPL91 from a non-O1 non-O139 Vibrio cholerae over the activity of CsrA and Fis. J. Med. Microbiol. 57, 1041-1045, 2008


  • Verma, R.; Tiwari, A.; Kaur, S.; Varshney, G.C. and Raghava, G.P.S.
    Identification of proteins secreted by malaria parasite into erythrocyte using SVM and PSSM profiles. BMC Bioinformatics. 16, 9:201, 2008.


  • Garg, A. and Raghava, G.P.S
    A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search. In Silico Biol., 8, 12, 2008.


  • Shukla, A. ; Raje, M. and Guptasarma, P..
    Coalescence of spherical beads of retro-HSP12.6 into linear and ring-shaped amyloid nanofibers. Biochemistry (Moscow) 73, 681-685, 2008.


  • Kalita, M.K.; Nandal, U.K.; Pattnaik, A.; Sivalingam, A,; Ramasamy, G.; Kumar, M.; Raghava, G.P.S. and Gupta, D.
    CyclinPred: a SVM-based method for predicting cyclin protein sequences. PLoS ONE, 3, e2605, 2008.


  • Sharma, S. and Guptasarma, P.
    Dimorphic aggregation behavior of a fusion polypeptide incorporating a stable protein domain (EGFP) with an amyloidogenic sequence (retroCspA). FEBS Lett., 582, 2203-2211, 2008.


  • Mir, M.A. and Agrewala, J.N.
    Signaling through CD80: an approach for treating lymphomas. Expert Opin. Ther. Targets. 12, 969-979, 2008.


  • Thakur, M.; Chaba, R.; Mondal, A.K. and Chakraborti, P.K.
    Inter-domain interaction reconstitutes the functionality of PknA, a eukaryotic-type Ser/Thr kinase from Mycobacterium tuberculosis. J. Biol. Chem., 283, 8023-8033, 2008.


  • Chandrayan, S.K. & Guptasarma, P.
    Partial destabilization of native structure by a combination of heat and denaturant facilitates cold denaturation in a hyperthermophile protein. Proteins : Structure, Function & Bioinformatics, 72, 539-546, 2008.


  • Ahmed, S.; Kapoor, D.; Singh, B. and Guptasarma, P.
    Conformational behavior of polypeptides derived through simultaneous global conservative site-directed mutagenesis of chymotrypsin inhibitor 2. Biochim. Biophys. Acta : Proteins and Proteomics, 1784, 796-805, 2008.


  • Ahmed, S.; Shukla, A. and Guptasarma, P.
    Folding behavior of a backbone reversed protein : Reversible polyproline type II to beta-sheet thermal transitions in retro-GroES multimers with GroES-like features. Biochim. Biophys. Acta : Proteins and Proteomics, 1784, 916-923, 2008.


  • Dhiman, R.; Kathania, M.; Raje, M. and Majumdar, S.
    Inhibition of bfl-1/A1 by siRNA inhibits mycobacterial growth in THP-1 cells by enhancing phagosomal acidification. Biochim. Biophys. Acta., 1780, 733-742, 2008.


  • Ahmed, S. and Guptasarma, P.
    Design of a soluble mini-protein through tandem duplication of the minimally-engineered beta hairpin 'tongue' motif of alpha hemolysin. Biochimie, 90, 957-967, 2008.


  • Lata, S. and Raghava, G.P.S.
    PRRDB: a comprehensive database of pattern-recognition receptors and their ligands. BMC Genomics, 2008, 9, 180, 2008.


  • Kumar, R, and Rajagopal, K.
    Single-step overlap-primer-walk polymerase chain reaction for multiple mutagenesis without overlap extension. Anal. Biochem., 377, 105-107, 2008.


  • Manickam, N.; Ghosh, A.,Jain, R.K. and Mayilraj, S.
    Description of a novel indole oxidizing bacterium Pseudomonas indoloxydans sp. nov., isolated from a pesticide contaminated site. Syst. Appl. Microbiol., 31, 101-107, 2008.


  • Chandrayan, S.K.; Dhaunta, N. and Guptasarma, P.
    Expression, purification, refolding and characterization of a putative lysophospholipase from Pyrococcus furiosus : Retention of structure and lipase/esterase activity in the presence of water-miscible organic solvents at high temperatures. Protein Expr. Purif., 59, 327-333, 2008.


  • Wangoo, N.; Bhasin, K.K.; Mehta, S.K. and Suri, C.R.
    Synthesis and capping of water-dispersed gold nanoparticles by an amino acid: Bioconjugation and binding studies. J. Colloid Interface Sci. 323, 247-254, 2008.


  • Kaur, J.; Boro, R.C.; Wangoo, N.; Singh, K.R. and Suri, C.R.
    Direct hapten coated immunoassay format for the detection of atrazine and 2,4-dichlorophenoxyacetic acid herbicides. Anal. Chim. Acta. 607,92-99, 2008.


  • Wangoo, N.; Bhasin, K.K.; Boro, R. and Suri, C.R.
    Facile synthesis and functionalization of water-soluble gold nanoparticles for a bioprobe. Anal. Chim. Acta. 610, 142-148, 2008.


  • Wangoo, N.; Shekhawat, G.S. and Suri, C.R.
    Interaction of gold nanoparticles with protein: A spectroscopic study to monitor protein conformational change. Appl. Phys. Lett. 92, 133104, 2008.


  • Suri, C.R.; Kaur J.; Gandi, S. and Shekhawat, G.S.
    Lable-free ultra-sensitive detection of atrazine based on nanomechanics. Nanotechnology, 19,
    235502, 2008.


  • Verma, A., Sharma, S., Ganguly, N.K., Majumdar, S., Guptasarma, P., and Luthra-Guptasarma, M.
    Identification and characterization of a spontaneously aggregating amyloid-forming variant of human PrP((90-231)) through phage-display screening of variants randomized between residues 101 and 112. Int. J. Biochem. Cell Biol., 40, 663-676, 2008.


  • Vyas, R.; Kumar, V.; Panjikar, S.; Karthikeyan, S.; Kishan, K.V.; Tewari, R. and Weiss, M.S.
    Purification, crystallization and preliminary X-ray diffraction analysis of aspartate semialdehyde dehydrogenase (Rv3708c) from Mycobacterium tuberculosis. Acta. Crystallogr. Sect F Struct. Biol. Cryst. Commun., 64, 167-170, 2008.


  • Wangoo, N.; Bhasin, K.K.; Boro, R. and Suri, C.R.
    Facile synthesis and functionalization of water-soluble gold nanoparticles for a bioprobe. Anal. Chim. Acta., 610, 142-148, 2008.


  • Sharma, S. and Guptasarma, P.
    Evidence of Native-like Substructure(s) in Polypeptide Chain of Carbonic Anhydrase Deposited into Insoluble Aggregates During Thermal Unfolding. Protein J., 27, 50-58, 2008.


  • Wallet, M.A.; Sen, Pradip; Flores, R.R.; Wang, Y.; Yi, Zuoan; Huang, Y.; Mathews, C.E.; Earp, H.S.; Matsushima, G.; Wang, Bo and Roland T.
    MerTK is required for apoptotic cell induced T cell tolerance. J. Exp. Med., 205, 219-232, 2008.


  • Sinha, A.; Gupta, S.; Bhutani, S.; Pathak, A. and Sarkar, D.
    PhoP-PhoP interaction at adjacent PhoP binding sites is influenced by protein phosphorylation. J. Bacteriol., 190, 1317-1328, 2008.


  • Ahmed, S. and Singh Jagmohan
    RT-PCR method for selective detection of silent gene transcripts in silencing mutants in hemothallic strains of Schizosaccharomyces pombe. Biotechniques, 44, 54-58, 2008.


  • Gowthaman, U. and Agrewala, J.N.
    In silico tools for predicting peptides binding to HLA-class II molecules: more confusion than conclusion. J. Proteome. Res. 7, 154-163, 2008.


  • Kaur, J.; Boro, R.C.; Wangoo, N.; Singh, K.R. and Suri, C.R.
    Direct hapten coated immunoassay format for the detection of atrazine and 2,4-di chlorophenoxyacetic acid herbicides. Anal. Chim. Acta., 607, 92-99, 2008.


  • Chakraborti, D; Basu, J.M.; Sen, Pradip; Sundar, S. and Roy, S.
    Human placental extract offers protection against pentavalent antimonial-sensitive and resistant experimental visceral leishmaniasis: a pilot study for phase I clinical trial. Ann. Trop. Med. Parasitol., 102, 21-38, 2008.


  • Aggarwal, M.; Radha Kishan, K.V.and Mondal, A.K.
    Creation of salt-insensitive 3'(2'), 5'-bisphosphate nucleotidase by modelling and mutagenesis approach. Arch. Biochem. Biophys., 469, 174-183, 2008.

 
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PUBLICATIONS DURING 2007


  • Kaur, J.; Singh, K.V.; Boro, R.; Thampi, K.R.; Raje, M.; Varshney, G.C. and Suri, C.R.
    Immunochromatographic dipstick assay format using gold nanoparticles labeled protein-hapten conjugate for the detection of atrazine. Environ. Sci. Technol. 41, 5028-5036, 2007.


  • Vivona, S.; Gardy, J.L.; Ramachandran, S.; Brinkman, F.S.L.; Raghava, G.P.S.; Flower, D.R. and Filippini, F.
    Computer aided biotechnology: from immunoinformatics to reverse vaccinology. Trends Biotechnol., 26, 190-200, 2008.


  • Lata, S. and Raghava, G.P.S.
    CytoPred: a server for prediction and classification of cytokines. Protein Eng. Des. Sel., 21, 279-282, 2008.


  • Pashov, A.; Monzavi-Karbassi, B.; Raghava, G.P.S. and Kieber-Emmons, T.
    Peptide mimotopes as prototypic templates of broad-spectrum surrogates of carbohydrate antigens for cancer vaccination. Crit. Rev. Immunol., 27, 247-270, 2007.


  • Raghava, G. P. S.
    Prediction of subcellular localization of proteins using machine learning techniques and evolutionary information. Amino Acids, 33, X-XI, 2007.


  • Bachhawat, N. and Singh, B.
    Mycobacterial PE_PGRS proteins contain calcium-binding motifs with parallel beta-roll folds. Genomics Proteomics Bioinformatics, 5:236-241, 2007.


  • Saha, S. and Raghava, G. P. S.
    Prediction of allergenic proteins and mapping of IgE epitopes in allergens. Nature Protocols 10.1038/nprot.2007.505, 2007 (Online)


  • Singh, H. and Raghava, G. P. S.
    Prediction and mapping of promiscuous MHC class II binders in an antigen sequence. Nature Protocols 10.1038/nprot.2007.502, 2007 (Online)


  • Lata, S.; Sharma, B.K. and Raghava, G. P. S.
    Analysis and prediction of antibacterial peptides. Nature Protocols 10.1038/nprot.2007.503, 2007 (Online)


  • Kumar, M.; Verma, R. and Raghava, G. P. S.
    Mitpred2: An improved method for predicting mitochondrial proteins using SVM and HMM. Nature Protocols 10.1038/nprot.2007.488, 2007 (Online)


  • Suresh, K.; Mayilraj, S.; Bhattacharya, A. and Chakrabarti, T.
    Planococcus columbae sp. nov., isolated from pigeon faeces. Int. J. Syst. Evol. Microbiol., 57, 1266-1271, 2007.


  • Suresh, K.; Prakash, D.; Rastogi, N. and Jain, R.K.
    Clostridium nitrophenolicum sp. nov., a novel anaerobic p-nitrophenol-degrading bacterium, isolated from a subsurface soil sample. Int. J. Syst. Evol. Microbiol., 57, 1886-1890, 2007.


  • Muthukrishnan, S.; Garg, A. and Raghava, G.P.S.
    Oxypred: prediction and classification of oxygen-binding proteins. Genomics Proteomics Bioinformatics, 5, 250-252, 2007.


  • Kumar, M., Gromiha, M.M. and Raghava, G.P.S.
    Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins: Structure, Function and Bioinformatics, 71, 189-194, 2007.


  • Shahi, P.; Sharma, R.; Sanger, S.; Kumar, I. and Jolly, R.S
    Formation of amyloid fibrils via longitudinal growth of oligomers. Biochemistry. 46, 7365-7373, 2007.


  • Tiwary, B.N.; Prasad, B.; Ghosh, A.; Kumar, S. and Jain, R.K.
    Characterization of two novel biovar of Agrobacterium tumefaciens isolated from root nodules of Vicia faba. Curr. Microbiol., 55, 328-333, 2007.


  • Shukla, A.; Sharma, S. and Guptasarma, P.
    Confocal spectrofluorimetric evidence for the hetero-aggregation of sequence-scrambled forms of two model all-beta sheet proteins. Int. J. Biol. Macromol., 41, 650-654. 2007.


  • Kumar, M.; Gromiha, M.M. and Raghava G.P.S.
    Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics. 8, 463, 2007.


  • Mir, M.A. and Agrewala, J.N.
    Influence of CD80 and CD86 co-stimulation in the modulation of the activation of antigen presenting cells. Curr. Immunol. Rev., 3, 160-169, 2007.


  • Ghosh, A.; Goyal, A. and Jain, R.K.
    Study of methanol-induced phenotypic changes in a novel strain of Acinetobacter lwoffii. Arch. Microbiol.,188, 533-539, 2007.


  • Patnaik, P.R.
    Sensitivity propagations in response to start-up perturbations during batch fermentations with complementary cultures. Chem. Eng. Res. Des., 85, 1079-1085, 2007.


  • Patnaik, P.R.
    "Intelligent" descriptions of microbial kinetics in finitely dispersed bioreactors: neural and cybernetic models for PHB biosynthesis by Ralstonia eutropha. Microb. Cell Fact., 8, 6-23, 2007.


  • Patnaik, P.R.
    Fractal analysis of the attenuation of noise inflow to bioreactors under monotonic, oscillating and chaotic conditions. Intl. J. Chem. Reactor Eng., 5, A23, 2007.


  • Patnaik, P.R.
    Fractal characterization of fermentations with budding yeast under deterministic and chaotic conditions. Fractals, 15, 163-171, 2007.


  • Kaur, J.; Singh, K.V.; Boro, R.; Thampi, K.R.; Raje, M.; Varshney, G.C. and Suri C.R.
    Immunochromatographic dipstick assay format using gold nanoparticles labeled protein-hapten conjugate for the detection of atrazine. Environ. Sci. Technol., 41, 5028-5036, 2007.


  • Shukla, A.; Sharma, S. and Guptasarma, P.
    Confocal spectrofluorimetric evidence for the hetero-aggregation of sequence-scrambled forms of two model all-beta sheet proteins. Int. J. Biol. Macromol., 41, 650-654,2007.


  • Kapoor, D.; Chandrayan, S.K.; Ahmed, S. and Guptasarma, P.
    Using DNA sequencing electrophoresis compression artifacts as reporters of stable mRNA structures affecting gene expression. Electrophoresis, 28, 3862-3867, 2007.


  • Bharadwaj, S.; Shukla, A.; Mukherjee, S.; Sharma, S.; Guptasarma, P.; Chakraborti, A.K. and Chakrabarti, A.
    Putative structure and characteristics of a red water-soluble pigment secreted by Penicillium marneffei. Med. Mycol., 45, 419-427, 2007.


  • Andrianifahanana, M.; Singh, A.P.; Nemos, C.; Ponnusamy, M.P.; Moniaux, N.; Mehta, P.P.; Varshney, G.C. and Batra, S.K.
    IFN-Y-induced expression of MUC4 in pancreatic cancer cells is mediated by STAT-1 upregulation: a novel mechanism for IFN-Y response. Oncogene, 26, 7251-7261, 2007.


  • Rishi, L.; Dhiman, R.; Raje, M. and Majumdar S.
    Nitric oxide induces apoptosis in cutaneous T cell lymphoma (HuT-78) by downregulating constitutive NF-kappaB. Biochim Biophys Acta., 1770; 1230-1239, 2007.


  • Rashid, M.; Saha, S. and Raghava, G.P.S.
    Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs. BMC Bioinformatics, 8, 337, 2007.


  • Moniaux, N.; Chaturvedi, P.; Varshney, G.C.; Meza, J.L.; Rodriguez-Sierra, J.F.; Aubert, J.P. and Batra, S.K.
    Human MUC4 mucin induces ultra-structural changes and tumorigenicity in pancreatic cells. Br. J. Cancer, 97, 345-357, 2007.


  • Osman, S.; Moissl, C.; Hosoya, N.; Briegel, A.; Mayilraj, S.; Satomi M. and Venkateswaran, K.
    Tetrasphaera remsis sp. nov., isolated from the Regenerative Enclosed Life Support Module Simulator (REMS) air system. Int. J. Syst. Evol. Microbiol., 57, 2749-2753, 2007.


  • Goyal, D.; Sahoo, D.K. and Sahni, G.
    Hydrophobic interaction expanded bed adsorption chromatography (HI-EBAC) based facile purification of recombinant streptokinase from E. coli inclusion bodies. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci., 850, 384-391, 2007.


  • Radhakishan, K.V.
    Structural Biology, Protein Conformations and Drug Designing. Current Protein and Peptide Science. 8, 376-380, 2007


  • Kaur, H.; Garg, A. and Raghava, G. P. S.
    PEPstr: A de novo method for tertiary structure prediction of small bioactive peptides. Protein Pept Lett., 14, 626-30, 2007.


  • Lata, S.; Sharma, B.K. and Raghava, G. P. S.
    Analysis and prediction of antibacterial peptides. BMC Bioinformatics, 8, 263, 2007.


  • Mishra, N.; Kumar, M. and Raghava, G. P. S.
    Support vector machine based method for predicting Glutathione S-transferases proteins. Protein Pept Lett., 6, 575-80, 2007.


  • Bhasin, M.and Raghava, G. P. S.
    A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes. J. Biosci., 32,
    31-42. 2007.


  • Greenbaum et al. ...... Raghava, G.P.S.
    Towards a consensus on datasets and evaluation metrics for developing B cell epitope prediction tools. J. Mol. Recognit., 20, 75-82, 2007.


  • Ganguli, D.; Kumar, C. and Bachhawat, A.K.
    The alternative pathway of glutathione degradation is mediated by a novel protein complex involving three new genes in Saccharomyces cerevisiae. Genetics , 175, 1137-1151, 2007.


  • Kaur, J. and Bachhawat, A.K.
    Yct1p, a novel, high-affinity, cysteine specific transporter from the yeast Saccharomyces cerevisiae. Genetics, 176, 877-890, 2007.


  • Patnaik. P.R.
    Robustness analysis of the E. coli chemosensory system to perturbations in chemoattractant concentrations. Bioinformatics, 23, 875-881, 2007.


  • Manickam, N.; Mishra, R. and Mayilraj, S.
    A novel pathway for the biodegradation of gamma-hexachlorocyclohexane by a Xanthomonas sp. Strain ICH12. J. Appl. Microbiol., 102, 1468-1478, 2007.


  • Sharma, N.; Pandey, J.; Gupta, N. and Jain, R.K.
    Growth and physiological response of Arthrobacter protophormiae RKJ100 toward higher concentrations of o-nitrobenzoate and p-hydroxybenzoate. FEMS Microb iol. Lett., 271, 65-70, 2007.


  • Patnaik, P.R.
    Hybrid filtering of feed stream noise from oscillating yeast cultures by combined Kalman and neural network configurations. Bioproc. Biosyst. Eng., 30, 181-188, 2007.


  • Patnaik, P.R.
    A reappraisal of the plasmid stability problem in chemostat cultures. Ind. J. Biotechnol., 6, 267-270, 2007.


  • Patnaik, P.R.
    Analysis of the effect of flow interruptions on fed-batch fermentation for PHB production by Ralstonia eutropha in finitely dispersed bioreactors. Chem. Eng. Commun., 194, 603-617, 2007.


  • Bhardwaj, S.; Sutar, R.; Bachhawat, A.K.; Singhi, S. and Chakrabarti, A.
    PCR-based identification and strain typing of Pichia anomala using the ribosomal intergenic spacer region IGS1. J. Med. Microb. 56, 185-189, 2007.


  • Cameotra, S.S.
    Preservation of microorganisms as deposits for patent application. Biochem. Biophys. Res. Comm., 353, 849-850, 2007.


  • Agrewala, J.N.; Brown, D.M.; Lepak, N.M.; Duso, D.; Huston, G. and Swain, S.L.
    Unique Ability of Activated CD4+ T Cells but Not Rested Effectors to Migrate to Non-lymphoid Sites in the Absence of Inflammation. J. Biol. Chem., 282, 6106-6115, 2007.


  • Alam, M.S.; Garg, S.K. and Agrawal, P.
    Molecular function of WhiB4/Rv3681c of Mycobacterium tuberculosis H37Rv: a[4Fe-4S] cluster co-ordinating protein disulphide reductase. Molecular Microbiol., 63, 1414-1431, 2007.


  • Pandey, J.; Ganesan, K. and Jain, R.K.
    Variations in T-RELF profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers. J. Microbiol. Method, 68, 633-638, 2007.


  • Chaudhuri, S.R.; Mallam, J.N.; Barrios, P.C.; Wadhwa, P.N.; Hurwitz, M.Y. and Hurwitz, R.L.
    Modulation of adenoviral transduction in vitro and in vivo by hyaluronan and its receptor CD44. Molecular Therapy, 15, 566-570, 2007.


  • Dhiman, R.; Raje, M. and Majumdar, S.
    Differential expression of NF-kB in mycobacteria infected THP-1 affects apoptosis. Biochim. Biophy. Acta., 1770, 649-659, 2007.


  • Sen, Pradip; Wallet M.A.; Zuoan, Y.; Huang, Y.; Henderson, M.; Mathews, C.E.; Earp, H.S.; Matsushima, G.; Baldwin, A.S. and Tisch, R.
    Apoptotic cells induce MerTK-dependent blockade of NF-kB activation in dendritic cells. Blood, 109,
    653-660, 2007.


  • Raje, C.I.; Kumar, S.; Harle, A; Nanda, J.S. and Raje, M.
    A microphage cell surface localized Glyceraldehyde-3-phosphate dehydrogenase functions as a transferring receptor. J. Biol. Chem., 282, 3252-3261, 2007.


  • Garg, S.K.; Alam, M.S.; Radhakishan, K.V. and Agrawal, P.
    Expression and characterization of .-(1,4)-glucan branching enzyme Rv1326c of Mycobacterium tuberculosis H37Rv. Protein Expr. Purif., 51, 198-208, 2007.


  • Saluja, Puja and Prasad, G.S.
    Debaryomyces singareniensis sp.nov., a novel yeast species isolated from a coal mine soil in India. FEMS Yeast Research, 17, 132-135, 2007.


  • Ghosh, A.; Khurana, M.; Mayilraj, S. and Jain, R.K.
    Bacillus lehensis sp. Nov., an alkalitolerant bacterium isolated from soil of Leh, India. Int. J. Syst. Evol. Microbiol., 57, 238-242, 2007.


  • Saluja, Puja and Prasad, G.S.
    Cryptococcus rajasthanensis sp. nov., an anamorphic yeast species related to Cryptococcus laurentii, isolated from Rajasthan, India Int. J. Syst. Evol. Microbiol., 57, 414 - 418, 2007.


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    Cloning and characterization of promoter-active DNA sequences from streptococcus equisimilis. Curr. Microbiol., 54, 48-53, 2007.


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यह साइट मोजि़ला फायरफॉक्स्, इंटरनेट एक्सप्लोरर 8 तथा उससे अधिक व स्क्रीधन रेसोल्यूशन 1024 X768 या अधिक पर सबसे अच्छी तरह से देखी जा सकती है ।