1P95 Protein Binding date May 09, 2003
title A Structural Study Of The Binding Of Flagellin By Toll-Like Receptor 5
authors S.G.Jacchieri, R.Torquato, R.R.Brentani
compound source
Molecule: Flagellin
Chain: A
Fragment: Residues 56-450
Synonym: Phase-1-I Flagellin
Organism_scientific: Salmonella Typhimurium
Organism_common: Bacteria

Molecule: Toll-Like Receptor 5
Chain: B
Fragment: Fragment Predicted To Bind Flagellin
Synonym: Tollinterleukin-1 Receptor-Like Protein 3

Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
similarity Contains 1 tir domain. Belongs to the bacterial flagellin family. Belongs to the toll-like receptor family. Contains 15 lrr (leucine-rich) repeats.[LRRCT]
subunit Binds myd88 via their respective tir domains (by similarity).
polymorphism This polymorphism acts in a dominant fashion and is associated with susceptibility to pneumonia caused by legionella pneumophila [mim. 608556]. Individuals with a stop codon polymorphism in position 352 are unable to mediate flagellin signaling.
tissue Highly expressed in ovary and in peripheral blood leukocytes, specially in monocytes, less in cd11c+ immature dendritic cells. Also detected in prostate and testis.
subcellular loc. Membrane; single-pass type i membrane protein (by similarity).
function Acts via myd88 and traf6, leading to nf-kappa-b activation, cytokine secretion and the inflammatory response. Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Mediates detection of bacterial flagellins. Participates in the innate immune response to microbial agents.
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1P95
  • View 1P95 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1P95
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1p95 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
    Other resources with information on 1P95
  • InterPro: IPR000483 , IPR003591 , IPR001611 , IPR000157 , IPR001492 , IPR001029
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2007
    Bioinformatics and Biological Computing
    Weizmann Institute of Science