1S5E Transerase,Toxin date Jan 20, 2004
title Cholera Holotoxin, Crystal Form 1
authors C.J.O'Neal, E.I.Amaya, M.G.Jobling, R.K.Holmes, W.G.Hol
compound source
Molecule: Cholera Enterotoxin, A Chain Precursor
Chain: A, B
Synonym: Nad(+)--Diphthamide Adp- Ribosyltransferase, Cholera Enterotoxin A Subunit;
Ec: 2.4.2.36
Engineered: Yes
Organism_scientific: Vibrio Cholerae
Organism_common: Bacteria
Gene: Ctxa, Toxa, Vc1457
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Parct5

Molecule: Cholera Toxin B Protein (Ctb)
Chain: D, E, F, G, H, J, K, L, M, N
Engineered: Yes

Organism_scientific: Vibrio Cholerae
Organism_common: Bacteria
Gene: Ctxb, Toxb, Vc1456
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Parct5
symmetry Space Group: P 1 21 1
R_factor 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.931 108.230 122.976 90.00 95.89 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GAL, NA enzyme NAD+-diphthamide ADP-ribosyltransferase;. ADP-ribosyltransferase;. Mono(ADPribosyl)transferase;. NAD-diphthamide ADP-ribosyltransferase. Transferase E.C.2.4.2.36 BRENDA
domain The four c-terminal residues of the a2 chain occupy the central pore of the holotoxin. Deletion of this residues weakens the interaction between the a subunit and the b pentamer whithout impairing the pentamer formation.
similarity Belongs to the Enterotoxin_b family.
subunit The a subunit contains two chains, a1 and a2, linked by a disulfide bridge. The holotoxin (choleragen) consists of a pentameric ring of b subunits whose central pore is occupied by the a subunit.
catalytic activ. Nad(+) + peptide diphthamide = nicotinamide + peptide n-(adp-d-ribosyl)diphthamide.
genes HEGFL, HBEGF (H. sapiens); ctxA, ctxB (V. cholerae); EFT2 (S. cerevisiae)
function This leads to an overproduction of camp and eventually to a hypersecretion of chloride and bicarbonate followed by water, resulting in the characteristic cholera stool. The a2 chain tethers a1 to the pentameric ring. The a1 chain catalyzes the adp-ribosylation of gs alpha, a gtp-binding regulatory protein, to activate the adenylate cyclase. It can bind five gm1 gangliosides. The b subunit pentameric ring directs the a subunit to its target by binding to the gm1 gangliosides present on the surface of the intestinal epithelial cells. It has no toxic activity by itself.
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • catalytic activity
  • transferase activity
  • transferase activity, transf...
  • NAD+-diphthamide ADP-ribosyl...
  • pathogenesis
  • extracellular region
  • F, J, N, K, E, H, M, D, G, L
  • pathogenesis
  • extracellular region
  • membrane
  • disease Diphtheria,susceptibility to
    Primary referenceCrystal Structures of an Intrinsically Active Cholera Toxin Mutant Yield Insight into the Toxin Activation Mechanism(,)., O'Neal CJ, Amaya EI, Jobling MG, Holmes RK, Hol WG, Biochemistry 2004 Apr 6;43(13):3772-3782. PMID:15049684
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (1s5e.pdb1.gz) 135 Kb
  • Biological Unit Coordinates (1s5e.pdb2.gz) 118 Kb
  • CSU: Contacts of Structural Units for 1S5E
  • Likely Quarternary Molecular Structure file(s) for 1S5E
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  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s5ea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1s5eb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1s5ed_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1s5ee_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1s5ef_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1s5eg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1s5eh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1s5ej_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1s5ek_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1s5el_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1s5em_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1s5en_, region N [Jmol] [rasmolscript] [script source]
  • Fold representative 1s5e from FSSP and Dali (Families of Structurally Similar Proteins)
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  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s5e_F] [1s5e_D] [1s5e_B] [1s5e_G] [1s5e_A] [1s5e_M] [1s5e_N] [1s5e_J] [1s5e_E] [1s5e_L] [1s5e_H] [1s5e_K]
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