1SE2 Toxin date Jul 20, 1995
title Staphylococcal Enterotoxin C2, Monoclinic Form
authors S.Swaminathan, M.Sax
compound source
Molecule: Staphylococcal Enterotoxin C2
Chain: A
Synonym: Sec2
Organism_scientific: Staphylococcus Aureus
symmetry Space Group: P 1 21 1
R_factor 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.430 69.920 42.220 90.00 90.10 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1JWM, 1SEB
similarity Belongs to the staphylococcal/streptococcal toxin family.[Stap_Strp_tox_C]
subcellular loc. Secreted protein.
Gene ENTC2 (S. aureus)
function The illness characterized by high fever, hypotension, diarrhea, shock, and in some cases death. Staphylococcal enterotoxins cause the intoxication staphylococcal food poisoning syndrome.
Gene
Ontology
ChainFunctionProcessComponent
A
  • pathogenesis
  • extracellular region
  • Primary referenceResidues defining V beta specificity in staphylococcal enterotoxins., Swaminathan S, Furey W, Pletcher J, Sax M, Nat Struct Biol 1995 Aug;2(8):680-6. PMID:7552730
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1se2.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1SE2
  • Likely Quarternary Molecular Structure file(s) for 1SE2
  • Retrieve 1SE2 in mmCIF format [Save to disk]
  • View 1SE2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1SE2
  • Protein Explorer, Easier to use and more powerful than RasMol. (Win and Mac only)
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SE2, from MSDmotif at EBI
  • Genome occurence of 1SE2's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1se2_1, region 1-120 [Jmol] [rasmolscript] [script source]
        - Domain d1se2_2, region 121-239 [Jmol] [rasmolscript] [script source]
  • Fold representative 1se2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1se2_A]
  • Other resources with information on 1SE2
  • InterPro: IPR006123 , IPR006173 , IPR006177 , IPR006126
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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