1T13 Transferase date Apr 15, 2004
title Crystal Structure Of Lumazine Synthase From Brucella Abortus Bound To 5-Nitro-6-(D-Ribitylamino)-2,4(1h,3h) Pyrimidinedione
authors S.Klinke, V.Zylberman, D.R.Vega, B.G.Guimaraes, B.C.Braden, F.A.Goldbaum
compound source
Molecule: 6,7-Dimethyl-8-Ribityllumazine Synthase
Chain: A, B, C, D, E
Synonym: Dmrl Synthase, Lumazine Synthase, Riboflavin Synthase Beta Chain;
Ec: 2.5.1.9
Engineered: Yes
Organism_scientific: Brucella Melitensis Biovar Abortus
Organism_common: Bacteria
Gene: Ribh, Bmeii0589, Bra0695
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 31 2 1
R_factor 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.321 126.321 165.669 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand INI, PO4 enzyme Transferase E.C.2.5.1.9 BRENDA
related structures by homologous chain: 1DI0
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B
  • riboflavin synthase activity...
  • transferase activity
  • riboflavin biosynthetic proc...
  • riboflavin synthase complex
  • Primary referenceCrystallographic Studies on Decameric Brucella spp. Lumazine Synthase: A Novel Quaternary Arrangement Evolved for a New Function?, Klinke S, Zylberman V, Vega DR, Guimaraes BG, Braden BC, Goldbaum FA, J Mol Biol 2005 Oct 14;353(1):124-37. PMID:16165152
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (1t13.pdb1.gz) 238 Kb
  • CSU: Contacts of Structural Units for 1T13
  • Likely Quarternary Molecular Structure file(s) for 1T13
  • Structure Factors (526 Kb)
  • Retrieve 1T13 in mmCIF format [Save to disk]
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
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  • 3D motif for 1T13, from MSDmotif at EBI
  • Fold representative 1t13 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t13_D] [1t13_B] [1t13_A] [1t13_E] [1t13_C]
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