General Information & Stepwise Help
In this era of genomics, the raw sequence data is being produced at exponential rate. This had created the need for automated genome annotation methods so that biological information can be obtained from sequence information.The determination of cellular localization of protein can provide important clue to elucidate the function of protein. The development of improved and efficient sub-cellular localization prediction methods can assist in the analysis of piled genomic data.In the past, many efforts have been made to develop computational methods for predicting the localization of proteins in the cells using different approaches.These methods are mostly based
Name of Protein-: This is an optional field.The name of protein may have letters and number with the "-" or "_". All other character are non-permissible.The field is assigned a default name "Protein". The sequence name is just used for only your information. It may be a problem with ?, ?, ? for example or an empty space within the name of the sequence, which is not allowed for reasons of security.
Protein sequence-:This server allows the submission of sequence in any of the standard formats. The user can paste plain sequence in the provided inbox.The server also has the facility for uploading the local sequence files. Amino acid sequences must be entered in the one-letter code.All the non standard characters will be ignored from the sequence.
Sequence Format:-The server can accept both the formatted or unformatted raw antigenic sequences.The server uses ReadSeq routine to parse the input.The user should choose wether the sequence uploaded or pasted is plain or formatted before running prediction.The results of the prediction will be wrong if the format choosen is wrong.
Prediction Approach:-The method allow the prediction on the basis of five different appraoches. These approaches along with the reliability to predict the subcellulat localization of proteins.The prediction is based on
An Sample of Query Submission form is shown below
Prediction Results:-After the analysis the result having the sequence of protein, length of protein, score of protein for each subcellular localization is illustrated. The results also depict the final predicted sub-cellular localization of protein.A sample of results page is shown below.