Webserver
Genome annotation
Structure prediction
Functional annotation
vaccine design
Databases
Miscellaneous
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Server
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Description
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FTG:
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A web server for locating probable
protein coding region in nucleotide sequence using fourier tranform approach (Issac,
B., Singh, H., Kaur, H. and Raghava, G.P.S. (2002) Bioinformatics 18:196).
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EGPred
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This server allows to predict gene (protein coding
regions) in eukaryote genomes that includes introns and exons, using similarity
aided (double) and consensus Ab Intion methods. (Issac B, Raghava GP. (2004) Genome Res.
14(9):1756-66)
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FTGPred:
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A web server for predicting
genes in a DNAsequence
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GWBLAST:
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A genome wide blast server. It allow
user to search ther sequence against sequenced genomes and annonated
proteomes. This integrate various tools which allows analysys of BLAST SEARCH
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SVMgene:
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It is a support vector based approach to identify the
protein coding regions in human genomic DNA
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SRF:
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Spectral Repeat Finder (SRF) is a
program to find repeats through an analysis of the power spectrum of a given
DNA sequence. By repeat we mean the repeated occurrence of a segment of N
nucleotides within a DNA sequence. SRF is an ab initio technique as no prior
assumptions need to be made regarding either the repeat length, its fidelity,
or whether the repeats are in tandem or not (Sharma D, Issac B, Raghava GP, Ramaswamy R. (2004) Bioinformatics.
20(9):1405-12)
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GWFASTA:
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Genome Wise Sequence Similarity Search
using FASTA. It allow user to search their sequence against sequenced genomes
and their product proteome. This integrate various tools which allows
analysys of FASTA search (Issac, B. and Raghava, G.P.S. (2002)
Biotechniques 33:548-56).
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GeneBench:
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A suite of datasets and tools for
evaluating gene prediction methods.
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MyPattern
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MyPattern Finder is a program for detection of a 'motif'
in DNA sequence by using an exact search method (Option A (1.0))
or an alignment technique (Option B
(1.0)).
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