Welcome to the GPSR Download Section!

Installation instructions for GPSR package

• Execute the following commands
  
  $ tar -zxvf gpsr_base_version.tar.gz [it will create gpsr_version folder]
  
  $ cd gpsr_version
  
  $ perl install.pl
  
  
• It will ask for the path of required programs like Perl, BLAST, SVM old (version 5.0), SVM New (version 6.1), MEME/MAST, HMMER etc.
  
• Perl path is mandatory to answer.
  
• Feel free to ignore few quesions but beer in mind that few softwares require those paths (see the indivisual software requirements in the table below)
  
• All executables are placed in the bin folder of gpsr installation directory and can be called as below
  
  Each program usage can be viewed by just running that program without any parameters
  $ installation_directory/bin/fasta2sfasta [will show the usage]
  
  $ installation_directory/bin/fasta2sfasta -i seq.fasta -o seq.sfasta
  
  

  Updating gpsr package

  you need to update the gpsr package if path of some commands like perl, blast has been changed or you are integrating indivisual softwares (present in the table below) into gpsr package. For updating run the update.pl program present in the gpsr installation directory
  
  $ perl update.pl
  
  

  ---

  Indivisual softwares available for integration into gpsr package

  (Each software details can be obtained from left-side menu under heading '7 Stand-alone programs')
  
  

  Integration Instructions for indivisual softwares Download the required software from the table below. Unzip the gpsr_software.tar.gz file as given above. Place the software folder into the gpsr_version/src/ directory $ perl update.pl [update the gpsr package]
  Example: Downloaded gpsr_eslpred2.tar.gz $ tar -zxvf gpsr_eslpred2.tar.gz Place eslpred2 into gpsr_version/src as gpsr_version/src/eslpred2 $ perl update.pl
  Software	Purpose	File size	Requirements
  gpsr_eslpred2	Prediction of eukaryotic subcellular localization.	~ 26 MB	svm_classify version 5.0, Blast executables
  gpsr_eslpred	Prediction of eukaryotic subcellular localization.	~ 7 MB	svm_classify version 5.0, Blast executables
  gpsr_hslpred	Prediction of subcellular localizations of human proteins.	~ 9 MB	svm_classify version 5.0, Blast executables
  Other softwares shall be added very soon!