Publications

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Pattanayak, Shrestha and Raychaudhuri, Deblina and Bandopadhyay, Purbita and Mukhopadhyay, Upasana and Mandal, Tithi and Liu, Chinky Shiu Chen and Kalidas, Nidhi and Roychowdhury, Sumangal and Chattopadhyay, Krishnananda and Ashish, Fnu and Sinha, Bidisha and Ganguly, Dipyaman (2026) Spatiotemporal regulation of ligand trafficking and TLR9 activation by PIEZO1 in human plasmacytoid dendritic cells. Research (Wash. D.C.), 9 (resear). p. 1067.

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Singh, Shubham and Mehta, Jaideep and Mishra, Ravi Pn (2026) Efficient bioprocess for high-density fermentation and rapid purification of soluble tag-free CRM197 protein expressed in Escherichia coli. International journal of biological macromolecules, 338 (2). ISSN 1879-0003

Srivastava, Simran and Kumar, Sahil and Mishra, Suman and Rajmani, Raju S and Singh, Randhir and Dutta, Somnath and Ringe, Rajesh Prakash and Varadarajan, Raghavan (2026) Development of a thermostable and broadly neutralizing pan-sarbecovirus vaccine candidate. ACS Infect. Dis., 12 (1). pp. 104-118.

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Agrahari, A. and Archana, K. and Singh, N. and Haldar, S. and Thakur, Krishan Gopal and Vinod, B.S.V and Tripathi, Rajkumar (2025) Identification and Characterization of a Novel Protein-Protein Interaction Among SARS-CoV-2 Nucleocapsid, Host SFPQ, and hnRNP U and Its Potential Role in Virus Replication. Biology of the cell,, 117 (4).

Aquib, Muhammad and Sharma, Tarun and Giri, Ved Prakash and Rao, Alka (2025) Peptides in chronic wound healing: Fighting infections and facilitating diabetic wound management. Journal of Drug Delivery Science and Technology, 105. p. 106599.

Arora, Prachi and Tewary, Suman and Krishnamurthi, Srinivasan and Kumari, Neelam (2025) Comparative Study on Evaluating the Performance of Automated Bacterial Colony Counting with Available APP and Software on Generated Image Dataset. SN Computer Science, 6.

Azhar, Mehmood and Chaudhary, Anita and Gaba, Swati and Bashir, Latief and Pinaka, Anil Kumar and Kamra, Anju and Kumar, Soora Naresh and Singh, Praveen Kumar and Panwar, Neeraj and Irfan, Mohammad and Ghazy, Abdel�Halim I. and Al-Doss, Abdullah A. (2025) Evaluation of Antifungal and Biopreservative Potential of Orange Peel-derived Lactobacillus fermentum O1.1 in Cherry Tomatoes. Journal of Food Protection, 88 (7). p. 100541.

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Baindara, Piyush and Solanki, Vipul and Singh, Shelley Sardul and Nallabelli, Nayudu and Kumari, Sumeeta and Bhardwaj, Pushpanjali and Grover, Vishakha and Thakur, Krishan Gopal and Korpole, Suresh (2025) The role of amino acid composition in the antibacterial activity of laterosporulin analogs. Journal of Applied Microbiology, 136 (9). lxaf208.

Bhardwaj, Priya and Bisht, Bhawana and Bhalla, Vijayender (2025) Nanoscale size impact of nanoparticle interaction and activity studies with urease. Nanoscale, 17. pp. 5000-5004.

Bisht, Bhawana and Bhardwaj, Priya and Chauhan, Sakshi and Sagrika, and Vedika, and Basnal, Namita and Bhalla, Vijayender (2025) Nanocatalysis of silver-nanobioprobe based supersensitive electrochemical detection of Salmonella serotypes targeting virulence protein. Biosensors and Bioelectronics, 268. p. 116872.

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Chakraborty, Debajyoti and Singh, Randhir and Rajmani, Raju S. and Kumar, Sahil and Ringe, Rajesh P. and Varadarajan, Raghavan (2025) Stabilizing Prefusion SARS-CoV-2 Spike by Destabilizing the Postfusion Conformation. Vaccines, 13 (3).

Chandal, Nishtha and Sharma, Nidhi and Cernicchi, Giada and Felicetti, Tommaso and Rondini, Tommaso and Acito, Mattia and Nandanwar, Hemraj and Sabatini, Stefano (2025) In vitro and in vivo investigations into the potential of quinazoline and quinoline derivatives as NorA efflux pump inhibitors against resistant staphylococcus aureus strains. Antibiotics (Basel), 14 (4). p. 339.

Chaudhary, Suman and Sindhu, Satyavir S. (2025) Iron sensing, signalling and acquisition by microbes and plants under environmental stress: Use of iron-solubilizing bacteria in crop biofortification for sustainable agriculture. Plant Science, 356. p. 112496.

Chhabra, Sonali and Parkesh, Raman (2025) A dual-function probe for inhibition and rapid detection of Mycobacterium tuberculosis. Chem. Commun., 61. pp. 12123-12126.

Choudhury, Jagrity and Chaudhuri, Barnali N (2025) Tubules, rods, and spirals: Diverse modes of SepF-FtsZ assembling. Cytoskeleton (Hoboken), 82 (7). pp. 432-443.

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Das, Joyasree and Pal, Shilpee and Negi, Anu and Sundharam, Shiva S and Yadav, Amit and Subramanian, Srikrishna and Sinha, S K and Samanta, Jayanta and Krishnamurthi, Srinivasan (2025) Genomic insights into novel predatory myxobacteria isolated from human feces. Microbiol. Spectr., 13 (7). e0214724.

Das, Sudesna and Sunnapu, Prasad and Rafi, Mohammed and Begum, Yasmin and Dey, Sudip and Joshi, Akshay and Singh, Nittu and Thakur, Krishan Gopal and Jaisankar, Parasuraman and Singh, Umesh Prasad (2025) 9-fluorenone-based synthetic sulfonamide compounds as dual inhibitors of SARS-CoV-2 Main-Protease and Papain-like Protease. Mol. Divers..

Das, Sudesna and Sunnapu, Prasad and Rafi, Mohammed and Begum, Yasmin and Dey, Sudip and Joshi, Akshay and Singh, Nittu and Thakur, Krishan Gopal and Jaisankar, Parasuraman and Singh, Umesh Prasad (2025) 9-fluorenone-based synthetic sulfonamide compounds as dual inhibitors of SARS-CoV-2 Main-Protease and Papain-like Protease. Mol. Divers..

Dayarathne, Monika and EBG, Jones and Rämä, Teppo and Hagestad, Ole and Abdel-Wahab, Mohamed and AH, Bahkali and Prematunga, Chasika and Azevedo, E. and KD, Hyde and Caeiro, Maria and Barata, Margarida and Sarma, V. and Devadatha, Bandarupalli and Guo, Sheng-Yu and Sakayaroj, Jariya and Pang, Ka-Lai (2025) Towards an integrative morpho-molecular classification of Lulworthiomycetidae. mycosphere, 16.

Dey, Madhumita and Gupta, Arpit and Badmalia, Maulik D and Ashish, and Sharma, Deepak (2025) Visualizing gaussian-chain like structural models of human α-synuclein in monomeric pre-fibrillar state: Solution SAXS data and modeling analysis. Int. J. Biol. Macromol., 288 (138614). p. 138614.

Dhiman, Pulkit and Das, Satyajeet and Pathania, Vikas and Rawat, Suraj and Nandanwar, Hemraj S and Thakur, Krishan G and Chaudhari, Vinod D (2025) Discovery of conformationally constrained dihydro Benzo-indole derivatives as metallo-β-lactamase inhibitors to tackle multidrug-resistant bacterial infections. J. Med. Chem., 68 (7). pp. 7062-7081.

Dhiman, Pulkit and Patwa, Amit and Narayanan, Arya B and Saini, Aayushi and Pundir, Ankita and Dhole, Manoj D and Chaudhari, Vinod D (2025) Disarming superbugs: New frontiers in inhibiting NDM-1 and other clinically relevant metallo-β-lactamases. Eur. J. Med. Chem., 301 (118220). p. 118220.

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Gambhir, Simran and Pandey, Shweta and Bajetha, Harsh and Kaur, Jasleen and Das, Ankita and Pranavathiyani, Gnanasekar and Aggarwal, Rupali and Maity, Upasana and Dange, Suhani and Singh, Vipin and Zarkar, Mayur and Sankhdher, Raghav and Singh, Bhupender and Seth, Shivani and Bhardwaj, Anshu (2025) ARKbase: Antimicrobial resistance Knowledgebase1.0. Nucleic Acids Res., 54 (D1). D703-D714.

Gautam, Sakshi and Thakur, Anamika and Kumar, Manoj (2025) i-DENV: development of QSAR based regression models for predicting inhibitors targeting non-structural (NS) proteins of dengue virus. Front. Pharmacol., 16. p. 1605722.

Gnanasekar, Pranavathiyani and Gambhir, Simran and Kinatukara, Priyadarshan and Bhardwaj, Anshu (2025) Functional (re)annotation of Mycobacteroides abscessus proteome using integrative sequence and AI-based structural approaches. Curr. Res. Struct. Biol., 10 (100172). p. 100172.

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Hoque, Israful and Singh, Nittu and Ghosh Dastidar, Uddipta and Martin, Alna Kuriyickal and Joshi, Akshay and Sardana, Yogesh and Singh Chawla, Ravneet and Das, Nirmal and Patra, Binita and Devi, Renuga and Das, Satyajeet and Das, Dipankar and Kumar, Sahil and Ringe, Rajesh P and Bokara, Kiran Kumar and Thakur, Krishan Gopal and Talukdar, Arindam (2025) Strategic design and optimization of Umifenovir analogues: Balancing antiviral efficacy and hERG toxicity against SARS-CoV-2. J. Med. Chem., 68 (9). pp. 9371-9406.

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Jana, Mrinmoy and Delipan, Rathina and Sarkar, Arighna and Raran-Kurussi, Sreejith and Ringe, Rajesh P and Mandal, Kalyaneswar (2025) Chemically synthesized LRAD3-D1 interacts with N-terminal domain of SARS-CoV-2 spike protein. Chembiochem, 26 (22). e202500403.

Joshi, Amaraja and Thite, Sonia and Godbole, Devika and Boruah, Dibyajyoti and Sindhu, Dev Kant and Prabhu, Atharva and Joseph, Neetha and Yadav, Amit and Sharma, Avinash and Lodha, Tushar (2025) Genomic insights into Marinospirillum alkalitolerans sp. nov., a novel PHB producing bacterium from an Indian impact crater, and an emended description of family Oceanospirillaceae. Antonie Van Leeuwenhoek, 118 (3). p. 53.

Joshi, Anjali and Kaur, Simranjeet and Singh, Pargat and Singh, Havneet and Dharamvir, Keya and Nayyar, Harsh and Verma, Gaurav (2025) Investigating the effect of synthetic cobalt and nickel oxide nanoparticles on the growth and physiology of Mungbean (Vigna radiata L.) seedlings, and exploring tunable magnetism switching behaviour. Plant Nano Biology, 11. p. 100140.

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Kadian, Varsha and Jangir, Babu Lal and Dalal, Pooja and Kumar, Sunil and Nair, Anroop and Dalal, Sweta and Rao, Rekha (2025) Novel capsaicin nanogel for arthritic pain and inflammation management: Formulation, in vitro, ex-vivo and in vivo assessment. AAPS PharmSciTech, 27 (1). p. 31.

Kalidas, Nidhi and Peddada, Nagesh and Pandey, Kalpana and Ashish, (2025) SAXS data based glycosylated models of human alpha-1-acid glycorprotein, a key player in health, disease and drug circulation. J. Biomol. Struct. Dyn.. pp. 1-15.

Kaur, Gurkeerat and Kumari, Pallawi and Devi, Priti and Swaminathan, Aparna and Kumar, Ashok and Dutta, Usha and Khanna, Poonam and Sharma, Deepak and Ray, Pallab and Darra, Aarti and Pandey, Rajesh and Khurana, Dheeraj (2025) Gut dysbiosis influences the pathophysiology of multiple sclerosis: A case-control study from North India. J. Neuroimmunol., 407 (578696). p. 578696.

Kaur, Harpreet and Tyagi, Arpit and Sharma, Ishani and Sharma, Deepak and Sinha, Sharmistha (2025) Differentiating α-synuclein aggregates using charge-sensitive gold nanoclusters. Nanoscale, 17 (32). pp. 18690-18701.

Kaur, Kiranjot and Sharma, Deepak and Haldar, Krishna Kanta and Kumar, Rajesh (2025) Deciphering the underlying mechanism for Au/ZnO nanocomposites-induced modulation of structural features and thermodynamic stability of horse myoglobin. Langmuir, 41 (19). pp. 12008-12021.

Kaur, Manpreet and Arya, Preeti and Chosyang, Stanzin and Singh, Balvinder (2025) Comprehending conformational changes in EmrE, multidrug transporter at different pH: insights from molecular dynamics simulations. J. Biomol. Struct. Dyn., 43 (7). pp. 3415-3428.

Kaur, Sarabjot and Kaur, Parminder and Attery, Shobit and Raka, Vrushali and Dadwal, Rajneesh and Nandanwar, Hemraj and Soni, Sanjeev (2025) Plasmonic photothermal based quick sterilization of surgical tools and pathogen suspensions. J. Photochem. Photobiol. B, 272 (113286). p. 113286.

Kodesia, Akriti and Kapoor, Srajan and Thakur, Krishan Gopal (2025) Structural and biophysical insights into RomR, MglB, and MglC interactions involved in regulating cell polarity in Myxococcus xanthus. J. Biol. Chem., 301 (12). p. 110907.

Kumar, Abhinit and Chhabra, Sonali and Parkesh, Raman (2025) Identification of prochlorperazine dimaleate as a Sortase A inhibitor from FDA libraries for MRSA infection treatment. RSC Adv., 15 (27). pp. 21666-21677.

Kumar, Nitish and Kaur, Bhupinder and Sharma, Deepika and Korpole, Suresh and Shukla, Shardulya and Bhardwaj, Pushpender and Patel, Manoj Kumar and Acharya, Somen and Khatri, Madhu and Saxena, Shweta (2025) Impact of altitudinal variations on plant growth dynamics, nutritional composition, and free living rhizospheric N2 fixing bacterial community of Eruca sativa. Sci. Rep., 15 (1). p. 13839.

Kumar, Raj and Pandita, Priyanka and Thakur, Mohan Singh and Nandanwar, Hemraj and Kaur, Amarjit (2025) Unlocking the therapeutic potential of Trans-Himalayan medicinal plant-derived silver nanoparticles for antimicrobial, antioxidant and cytotoxic studies. Vegetos.

Kumar, Reetesh and Borkotoky, Subhomoi and Gupta, Rohan and Gupta, Jyoti and Maji, Somnath and Tiwari, Savitri and Tyagi, Rajeev K and Oliva, Baldo (2025) Stabilizing the shield: C-terminal tail mutation of HMPV F protein for enhanced vaccine design. BioMedInformatics, 5 (3). p. 47.

Kumar, Sahil and Delipan, Rathina and Sharma, Chanchal and Jadoun, Jyoti and Kanjo, Kawkab and Singh, Randhir and Rajmani, Raju and Deshpande, Suprit and Pandey, Rajesh and Thakur, Krishan G and Bhattacharya, Jayanta and Sanders, Rogier W and van Gils, Marit J and Varadarajan, Raghavan and Ringe, Rajesh P (2025) Spike conformational and glycan heterogeneity associated with furin cleavage causes incomplete neutralization of SARS-CoV-2. Nat. Commun., 16 (1). p. 10130.

Kundu, Debasree and Martoliya, Yogita and Sharma, Anupam and Partap Sasan, Soorya and Wasi, Mohd and Prasad, Rajendra and Mondal, Alok K (2025) Overexpression of CBK1 or deletion of SSD1 confers fludioxonil resistance in yeast by suppressing Hog1 activation. Gene, 933 (148905). p. 148905.

Kushwaha, Neelam and Nandi, Deepak and Singh, Balvinder (2025) Subtractive proteomic approaches to identify drug targets: An analysis on hypothetical proteins of multidrug-resistant P. aeruginosa. ACS Omega, 10 (33). pp. 37188-37200.

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Lamba, Taruna and Zafar, Mohammad Adeel and Shaaz, Mohammad and Singh, Sanpreet and Singh, Sudhakar and Khan, Mohd Affan and Prajapati, Shivank and Malik, Junaid A and Nanda, Sidhanta and Siddiqui, Kaneez F and Arora, Ashish and Sehrawat, Sharvan and Agrewala, Javed N (2025) Mycobacterium tuberculosis Acr1 protein mitigates experimental autoimmune encephalomyelitis symptoms by generating myeloid-derived suppressor cells and regulatory T cells. Immunology, 177 (2). pp. 370-383.

Lata, Madhu and Pal, Shilpee and Subramanian, Srikrishna and Ramya, T N C (2025) Tandem domains differentially affect enzyme activity in the sialidases of Glaesserella parasuis, Clostridium perfringens, and Bifidobacterium bifidum. Glycobiology, 35 (12).

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Maity, Sebabrata and Dutta Gupta, Anwesha and Kamal, Izaz Monir and Das, Rajdeep and Mondal, Rupsha and Tyagi, Arpit and Sharma, Deepak and Chakraborty, Joy and Chakrabarti, Saikat and Chakrabarti, Oishee (2025) The endoplasmic reticulum protein FAM134B acts as a regulator of mitochondrial morphology. J. Cell Sci., 138 (22).

Modanwal, Radheshyam and Chaubey, Gaurav Kumar and Dilawari, Rahul and Talukdar, Sharmila and Sindhu, Anurag and Raje, Chaaya Iyengar and Raje, Manoj (2025) Metformin induces iron deprivation and enhances mitochondrial ROS in macrophages creating a hostile environment for survival of intracellular Mycobacterium tuberculosis. Biomed. Pharmacother., 189 (118314). p. 118314.

Murthy, Nalina and Bisht, Bhawana and Bhardwaj, Priya and Priyadarshini, Poornima (2025) Characterization and genome analysis of a novel lytic phage vB_ntSalS-cftriSP11 infecting Salmonella typhimurium. Mol. Biol. Rep., 52 (1). p. 812.

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Nanda, S and Zafar, M A and Singh, S and Malik, J A and Gautam, R and Ghosh, A and Basu, D and Agrewala, J N (2025) Chronic administration of morphine provokes generation of antibodies to morphine and immunosuppression in individuals with opioid use disorder. Journal of biosciences, 50.

Neetu, and Ahlawat, Shimona and Delipan, Rathina and Ringe, Rajesh P and Rao, Alka and Ramya, T N C (2025) Identification of SARS-CoV-2-binding lectins on a commercial lectin array. Sci. Rep., 15 (1). p. 21687.

Neetu, and Pal, Shilpee and Subramanian, Srikrishna and Ramya, T N C (2025) Cellulophaga algicola alginate lyase and Pseudomonas aeruginosa Psl glycoside hydrolase inhibit biofilm formation by Pseudomonas aeruginosa CF2843 on three-dimensional aggregates of lung epithelial cells. Biofilm, 9 (100265). p. 100265.

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Pandita, Priyanka and Kumar, Akshay and Manna, Souvik and Shukla, Shardulya and Patel, Manoj Kumar and Thakur, Mohan Singh and Kumar, Raj and Chaurasia, Om Prakash (2025) Eco-friendly synthesis of silver nanoparticles from Trans-Himalayan herbs. Def. Life Sci. J., 10 (4). pp. 340-347.

Pandita, Priyanka and Kumar, Akshay and Manna, Souvik and Shukla, Shardulya and Patel, Manoj Kumar and Thakur, Mohan Singh and Kumar, Raj and Chaurasia, Om Prakash (2025) Eco-friendly synthesis of silver nanoparticles from Trans-Himalayan herbs. Def. Life Sci. J., 10 (4). pp. 340-347.

Paul, Pankaj and Biswas, Kaushik and de Los Santos Villalobos, Sergio and Urquieta, Maria Edith Ortega and Bhattacharya, Dhruba and Karmakar, Sanmoy and Mazumder, Kamalika and Kushwaha, Hariom (2025) Streptomyces lothianensis sp. nov., an Antibiotic-Producing Strain Isolated From the Indian Sundarbans Mangrove Forest. J. Basic Microbiol. (e70096). e70096.

Paul, Sankalita and Pant, Rajat and Sharma, Poonam and Walia, Kshitiz and Gupta, Suhasi and Aseem, Adhil and Bajwa, Kamlesh Kumari and George, Ruben and Varma, Yudish and Bhatia, Tripta and Ramachandran, Rajesh and Tuli, Amit and Sharma, Mahak (2025) The neuropathy-linked protein TECPR2 is a Rab5 effector that regulates cargo recycling from early endosomes. Nat. Commun., 16 (1). p. 10537.

Paul, Suman and Sarkar, Argajit and Ghosh, Manisha and Datta, Debajyoti and Debnath, Moumita and Basak, Surajit and Raychaudhuri, Saumya and Bhattacharjee, Surajit (2025) Quercetin as an additive adjuvant enhances ciprofloxacin and tetracycline efficacy against Vibrio cholerae by disrupting membranes, inhibiting biofilms, and reducing virulence levels. 3 Biotech, 16 (1). p. 3.

Phartade, Vilas and Parab, Ashutosh and Manohar, Cathrine and Kumar, Pravin and Krishnamurthi, Srinivasan (2025) Variations in the bacterial and fungal community structure along the hypoxic gradient of the Arabian Sea oxygen-depleted environment based on eDNA metabarcoding analysis. Botanica Marina, 68.

Priya, Manisha and Gupta, Sonu Kumar and Koundal, Anil and Kapoor, Srajan and Tiwari, Snigdha and Kidwai, Saqib and Sorio de Carvalho, Luiz Pedro and Thakur, Krishan Gopal and Mahajan, Dinesh and Sharma, Deepak and Kumar, Yashwant and Singh, Ramandeep (2025) Itaconate mechanism of action and dissimilation in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. U. S. A., 122 (4). e2423114122.

Priya, Manisha and Gupta, Sonu Kumar and Koundal, Anil and Kapoor, Srajan and Tiwari, Snigdha and Kidwai, Saqib and Sorio de Carvalho, Luiz Pedro and Thakur, Krishan Gopal and Mahajan, Dinesh and Sharma, Deepak and Kumar, Yashwant and Singh, Ramandeep (2025) Itaconate mechanism of action and dissimilation in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. U. S. A., 122 (4). e2423114122.

Priyanka, and Sharma, Mohini and Vaid, Bhavna and Bharti, Ram and Raut, Sachin and Jolly, R S and Khatri, Neeraj (2025) Comprehensive safety and toxicity analysis of 2,2'-Bipyridine derivatives in combating MRSA biofilm formation and persistence. Front. Cell. Infect. Microbiol., 15. p. 1493679.

Priyanka, and Sharma, Mohini and Vaid, Bhavna and Bharti, Ram and Raut, Sachin and Jolly, R S and Khatri, Neeraj (2025) Comprehensive safety and toxicity analysis of 2,2'-Bipyridine derivatives in combating MRSA biofilm formation and persistence. Front. Cell. Infect. Microbiol., 15. p. 1493679.

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Rajasekar, Naveenraj and Srinivasan, Vijaya Bharathi and Krishnan, Karthikeyan and Giri, Chankit and Kumar, Mahesh and Singh, Balvinder and Rajamohan, Govindan (2025) The dual implications of iron homeostasis as a bacterial threat: its roles in virulence and antimicrobial resistance. Arch. Microbiol., 208 (1). p. 51.

Raka, Vrushali and Jangra, Manoj and Kaur, Parminder and Dadwal, Rajneesh and Kansal, Shubhangi and Angrup, Archana and Ray, Pallab and Nandanwar, Hemraj (2025) Preclinical evaluation of tridecaptin M: in vitro and in vivo efficacy against colistin-resistant Gram-negative bacterial pathogens and pharmacokinetics. Antimicrob. Agents Chemother., 69 (10). e0108325.

Raka, Vrushali and Nandanwar, Hemraj (2025) Antimicrobial Peptides (AMPs) as Potential Antibiotics: Classification, Development and Future Prospects in Combating Multi-drug Resistant Pathogens. Indian Journal of Microbiology.

Rana, Rekha and Sharma, Anushika and Dutta, Ashish and Patil, Prabhu B (2025) I-PREFR: Inverse PCR-based restriction enzyme FRee unidirectional strategy for rapid markerless chromosomal gene deletion and reconstitution in bacteria using suicide vectors. Bio Protoc., 15 (10). e5314.

Rana, Takshika and Konapur, Archana and Mishra, Preetu and Kour, Manpreet and Rao, Alka and Arora, Monika and Gavaravarapu, Subbarao M (2025) The impact of educational interventions on food label comprehension and food choices among adolescents: a scoping review. BMC Public Health, 25 (1). p. 2682.

Rohilla, Rishita and Kaundal, Soni and Thakur, Krishan Gopal (2025) The yxiD gene from Bacillus subtilis 6633 encodes a polymorphic toxin with tRNase activity and is neutralized by the cognate immunity protein YxxD. Nucleic Acids Res., 53 (22).

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Sagpariya, Tixit and Srivastava, Nandita and Katiyar, Sheetal and Roy Choudhury, Anirban (2025) A comprehensive review on production, characterization, and applications of marine bacterial exopolysaccharides. Int. J. Biol. Macromol., 331 (Pt 2). p. 148391.

Sahu, Shivani and Baid, Navin and Aggarwal, Deepali and Sharma, Ankita and Gun, Manisha and Molla, Sahanawaz and Sinha, Anunay and Dwivedi, Ambey Prasad and Tuli, Amit and Sharma, Mahak and Khosla, Sanjeev and Sundaramurthy, Varadharajan and Kumar, Ashwani (2025) Fundamental role of spatial positioning of Mycobacterium tuberculosis in mycobacterial survival in macrophages. Nat. Commun., 16 (1). p. 9368.

Sarkar, Binayak and Singh, Jyotsna and Yadav, Mohit and Sharma, Priya and Sharma, Raman Deep and Singh, Shweta and Chandramouli, Aakash and Mehdiratta, Kritee and Kumar, Ashwani and Kamat, Siddhesh S and Ghorpade, Devram S and Mohanty, Debasisa and Kumar, Dhiraj and Gokhale, Rajesh S (2025) PPARγ mediated enhanced lipid biogenesis fuels Mycobacterium tuberculosis growth in a drug-tolerant hepatocyte environment. Elife, 14 (RP1038).

Schultz, Júnia and Jamil, Tahira and Sengupta, Pratyay and Sivabalan, Shobhan Karthick Muthamilselvi and Rawat, Anamika and Patel, Niketan and Krishnamurthi, Srinivasan and Alam, Intikhab and Singh, Nitin K and Raman, Karthik and Rosado, Alexandre Soares and Venkateswaran, Kasthuri (2025) Genomic insights into novel extremotolerant bacteria isolated from the NASA Phoenix mission spacecraft assembly cleanrooms. Microbiome, 13 (1). p. 117.

Sharma, Yogesh and Kaur, Simran and Kandhasamy, Hariprasath and Sahoo, Subash Chandra and Chaudhari, Vinod D. (2025) Palladium-Catalyzed Intramolecular C–H Amination via Oxidative Coupling on Indole Derivatives: Access to 11H-Benzo[4,5]imidazo[1,2-a]indoles. Organic Letters, 27 (1). pp. 517-521.

Singh, Bhupender and Kumari, Nishi and Upadhyay, Ayush and Pahuja, Bhavini and Covernton, Eugenia and Kalia, Kishan and Tuteja, Kanika and Paul, Priyanka Rani and Kumar, Rakesh and Zarkar, Mayur Sudhakar and Bhardwaj, Anshu (2025) Nipah Virus Inhibitor Knowledgebase (NVIK): a combined evidence approach to prioritise small molecule inhibitors. J. Cheminform., 17 (1). p. 174.

Singh, Priyanka and Kadam, Nagesh Y and Panigrahi, Rajlaxmi and Mehrotra, Arpit and Upadhayay, Krishna and Dey, Madhumita and Tyagi, Arpit and Aquib, Muhammad and Nielsen, Janni and Kleijwegt, Giulia and Singh, Prashant and Sharma, Abhishek and Rao, Alka and Otzen, Daniel E and Kumar, Ashutosh and Sharma, Deepak (2025) Sulfamerazine as a potential modulator against α-synuclein aggregation and associated toxicity. ACS Chem. Neurosci., 16 (5). pp. 880-894.

Singh, Swati and Arya, Garima and Mishra, Rajesh and Singla, Shivam and Pratap, Akhil and Upadhayay, Krishna and Sharma, Monika and Chaba, Rachna (2025) Molecular mechanisms underlying allosteric behavior of Escherichia coli DgoR, a GntR/FadR family transcriptional regulator. Nucleic Acids Res., 53 (1).

Singh, Vidhu and Talukdar, Sharmila and Nirwal, Niharika and Raje, Manoj and Mishra, Prabhat Ranjan and Nandanwar, Hemraj (2025) Impact of IMT-P8 on the efficacy of conventional antibiotics for the treatment of drug-resistant and intracellular Staphylococcus aureus. ACS Infect. Dis., 11 (8). pp. 2232-2245.

Srinivasan, Vijaya Bharathi and Rajasekar, Naveenraj and Krishnan, Karthikeyan and Kumar, Mahesh and Giri, Chankit and Singh, Balvinder and Rajamohan, Govindan (2025) Genomic and functional characterization of multidrug-resistant E. coli: Insights into resistome, virulome, and signaling systems. Antibiotics (Basel), 14 (7). p. 667.

Srivastava, Nandita and Mohan, Roshini and Roy Choudhury, Anirban (2025) A novel gellan-based nanoemulgel delivery system for co-encapsulation and in vitro digestion of hydrophilic/hydrophobic nutraceuticals. Carbohydr. Polym., 348 (Pt A). p. 122855.

Srivastava, Nandita and Roy Choudhury, Anirban (2025) Gellan-amino acid hydrogel-based bioreactor for optimizing the production of yeast metabolites. Carbohydr. Polym., 351 (123101). p. 123101.

Srivastava, Nandita and Roy Choudhury, Anirban (2025) Understanding the combinatorial impact of amino acids as bio-linker on rheological behavior of gellan hydrogel blends. Int. J. Biol. Macromol., 303 (140686). p. 140686.

Srivastava, Pallavi and Singh, Saurabh and Soni, Mohini and Pratap, J Venkatesh and Subramanian, Srikrishna and Manickam, Natesan (2025) Enzymatic degradation of PET by hydrolase from Brucella intermedia IITR130 and its genomic insights. Biodegradation, 36 (3). p. 45.

Srivastava, Pallavi and Subramanian, Srikrishna and Manickam, Natesan (2025) Biochemical and molecular mechanisms of Rhodococcus rhodochrous IITR131 for polyethylene terephthalate degradation. J. Appl. Microbiol., 136 (1).

Srivastava, Simran and Kumar, Sahil and Mishra, Suman and Rajmani, Raju S and Singh, Randhir and Dutta, Somnath and Ringe, Rajesh Prakash and Varadarajan, Raghavan (2025) Development of a thermostable and broadly neutralizing pan-sarbecovirus vaccine candidate. ACS Infect. Dis., 12 (1). pp. 104-118.

T

Tiwari, Aakriti and Sharma, Anil Kumar and Pinnaka, Anil Kumar and Datta, Sonal (2025) The plant microbiome: A key driver of plant health and productivity. Physiological and Molecular Plant Pathology, 139. p. 102818.

Tripathi, Varsha and Pal, Shilpee and Subramanian, Srikrishna and Manickam, Natesan (2025) Unravelling dibenzothiophene degradation pathway in a novel Ancylobacter bharuchii IITR112 and insights from genome analysis. Journal of Environmental Chemical Engineering, 13 (2). p. 115630.

V

Vasudeva, Gunjan and Sidhu, Chandni and Vaid, Kalyan and Priyadarshini, Pragya and Kumar, Vanish and Krishnan, Muthu and Singh, Balvinder and Pinnaka, Anil Kumar (2025) Bioremediation of catecholic pollutants with novel oxygen-insensitive catechol 2,3-dioxygenase and its potential in biomonitoring of catechol in wastewater. Environmental Pollution, 367. p. 125613.

W

Walia, Ruhi and Chaudhuri, Saumya Ray and Dey, Priyankar (2025) Reciprocal interaction between gut microbiota and aloe-emodin results in altered microbiome composition and metabolism of aloe-emodin. Food Bioscience, 70. p. 107061.

Y

Yadav, Manisha and Muthusamy, Sureshan and Kadhirvel, Saraboji and Sharma, Deepak and Kumar, Rajesh (2025) Determining factors for spermidine-induced modulation of conformational stability and dynamics of horse myoglobin. Biochemistry, 64 (13). pp. 2899-2915.

Yadav, Vinay and Manjhi, Anjali and Vadakedath, Nithya (2025) Assessment of heavy metals content and diversity of mercury-tolerant bacteria in heavy metal-polluted environmental samples and mercury bioremediation ability of isolated strains. Environmental Advances, 19. p. 100624.

A

Ahuja, Nancy and Gupta, Shalini and Arora, Rashmi and Bhagyaraj, Ella and Tiwari, Drishti and Kumar, Sumit and Gupta, Pawan (2024) Nr1h4 and Thrb ameliorate ER stress and provide protection in the MPTP mouse model of Parkinson ` s. LIFE SCIENCE ALLIANCE, 7 (7).

B

Bansal, Kanika and Saroha, Tanu and Patil, Prashant P. and Kumar, Sanjeet and Kumar, Sunil and Singhal, Lipika and Gautam, Vikas and Patil, Prabhu B. (2024) Evolutionary trends of carbapenem-resistant and susceptible Acinetobacter baumannii isolates in a major tertiary care setting from North India. INFECTION GENETICS AND EVOLUTION, 117.

Bhardwaj, Kanika and Kalita, Arunima and Verma, Neha and Prakash, Anand and Thakur, Ruchika and Dutta, Dipak (2024) Rho-dependent termination enables cellular pH homeostasis. JOURNAL OF BACTERIOLOGY, 206 (1).

C

Chaubey, Gaurav Kumar and Modanwal, Radheshyam and Dilawari, Rahul and Talukdar, Sharmila and Dhiman, Asmita and Chaudhary, Surbhi and Patidar, Anil and Raje, Chaaya Iyengar and Raje, Manoj (2024) Chronic hyperglycemia impairs anti-microbial function of macrophages in response to Mycobacterium tuberculosis infection. IMMUNOLOGIC RESEARCH.

Chopra, Tavishi and Parkesh, Raman (2024) Microwave-Assisted Synthesis of Functionalized Carbon Nanospheres Using Banana Peels: pH-Dependent Synthesis, Characterization, and Selective Sensing Applications. ACS OMEGA, 9 (4). pp. 4555-4571.

D

Devi, Sonia and Negi, Sushmita and Tandel, Nikunj and Dalai, Sarat and Tyagi, Rajeev (2024) Oleuropein: a viable therapeutic option for malaria and cancer. Drug Discovery Today, 30. p. 104254.

Dilawari, Rahul and Chaubey, Gaurav Kumar and Modanwal, Radheshyam and Dhiman, Asmita and Talukdar, Sharmila and Kumar, Ajay and Raje, Chaaya Iyengar and Raje, Manoj (2024) Glyceraldehyde-3-Phosphate Dehydrogenase Binds with Spike Protein and Inhibits the Entry of SARS-CoV-2 into Host Cells. JOURNAL OF INNATE IMMUNITY, 16 (1). pp. 133-142.

F

Farooq, Sheza and Kumar, Aman and Chaudhary, Suman and Maan, Sushila (2024) Development of TaqMan probe- based RT-qPCR assays for detection of BoHV-1 latency in Bovine. INDIAN JOURNAL OF ANIMAL SCIENCES, 94 (3). pp. 247-250.

K

Katiyar, Sheetal and Srivastava, Nandita and Choudhury, Anirban Roy (2024) Microbial fermentation-based synthesis of nano-curcumin suggesting the role of pullulan in nano-formulation. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 265 (2).

Khan, Hina and Paul, Partha and Goar, Harsh and Bamniya, Bhanwar and Baid, Navin and Sarkar, Dibyendu (2024) Mycobacterium tuberculosis PhoP integrates stress response to intracellular survival by regulating cAMP level. ELIFE, 13.

Kumar, Prashant and Madhawan, Akansha and Sharma, Akshya and Sharma, Vinita and Das, Deepak and Parveen, Afsana and Fandade, Vikas and Sharma, Deepak and Roy, Joy (2024) A sucrose non-fermenting-1-related protein kinase 1 gene from wheat, TaSnRK1α regulates starch biosynthesis by modulating AGPase activity. PLANT PHYSIOLOGY AND BIOCHEMISTRY, 207.

Kumari, Pallawi and Kaur, Manmeet and Dindhoria, Kiran and Ashford, Bruce and Amarasinghe, Shanika L. and Thind, Amarinder Singh (2024) Advances in long-read single-cell transcriptomics. HUMAN GENETICS.

M

Mahey, Nisha and Tambat, Rushikesh and Kalia, Ritu and Ingavale, Rajnita and Kodesia, Akriti and Chandal, Nishtha and Kapoor, Srajan and Verma, Dipesh Kumar and Thakur, Krishan Gopal and Jachak, Sanjay and Nandanwar, Hemraj (2024) Pyrrole-based inhibitors of RND-type efflux pumps reverse antibiotic resistance and display anti-virulence potential. PLOS PATHOGENS, 20 (4).

Malik, Asif A. and Dangroo, Nisar A. and Kaur, Parminder and Attery, Shobit and Rather, Manzoor A. and Khan, Abrar and Ara, Tabassum and Nandanwar, Hemraj (2024) Discovery of novel dihydronaphthalene -imidazole ligands as potential inhibitors of Staphylococcus aureus multidrug resistant NorA efflux pump: A combination of experimental and in silico molecular docking studies. MICROBIAL PATHOGENESIS, 190.

Megha, K. B. and Arathi, A. and Shikha, Saini and Alka, Rao and Ramya, Prabhu and Mohanan, P. V. (2024) Significance of Melatonin in the Regulation of Circadian Rhythms and Disease Management. MOLECULAR NEUROBIOLOGY.

N

Nautiyal, Abhilek K. and Priyanka, . and Paul, Pranoy and Raut, Sachin and Bhaskar, Thallada and Chowdhury, Nilotpal and Khatri, Neeraj and Ghosh, Debashish (2024) Bioproduction of yeast single cell oil with acute oral toxicity study intended for edible oil application. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 40 (7).

Negi, Sushmita and Tandel, Nikunj and Garg, Neeraj K. and Sharma, Prakriti and Kumar, Rajinder and Sharma, Praveen and Kumar, Reetesh and Saini, Sheetal and Sharma, Aman and Tyagi, Rajeev K. (2024) Co-Delivery of Aceclofenac and Methotrexate Nanoparticles Presents an Effective Treatment for Rheumatoid Arthritis. INTERNATIONAL JOURNAL OF NANOMEDICINE, 19. pp. 2149-2177.

P

Pirhaghi, Mitra and Mamashli, Fatemeh and Moosavi-Movahedi, Faezeh and Arghavani, Payam and Amiri, Ahmad and Davaeil, Bagher and Mohammad-Zaheri, Mahya and Mousavi-Jarrahi, Zahra and Sharma, Deepak and Langel, Ulo and Otzen, Daniel Erik and Saboury, Ali Akbar (2024) Cell-Penetrating Peptides: Promising Therapeutics and Drug-Delivery Systems for Neurodegenerative Diseases. MOLECULAR PHARMACEUTICS, 21 (5). pp. 2097-2117.

Prakash, Anand and Dutta, Dipak (2024) Bicyclomycin generates ROS and blocks cell division in Escherichia coli. PLOS ONE, 19 (3).

R

Rahisuddin, R. and Thakur, Payal and Kumar, Narender and Saini, Neha and Banerjee, Shrijta and Singh, Ravi Pratap and Patel, Madhuri and Kumaran, S. (2024) Multi-oligomeric and catalytically compromised serine acetyltransferase and cysteine regulatory complex of Mycobacterium tuberculosis. BIOCHIMIE, 221. pp. 110-124.

Rajeev, Ramisetti and Mishra, Rakesh K. and Khosla, Sanjeev (2024) DNMT3L interacts with Piwi and modulates the expression of piRNAs in transgenic Drosophila. EPIGENOMICS, 16 (6). pp. 375-388.

S

Saini, Manisha and Upadhyay, Neelam and Dhiman, Kanika and Manjhi, Satish Kumar and Kattuparambil, Aman Achutan and Ghoshal, Antara and Arya, Richa and Dey, Sanjay Kumar and Sharma, Aditya and Aduri, Raviprasad and Thelma, B. K. and Ashish, Fnu and Kundu, Suman (2024) ARL15, a GTPase implicated in rheumatoid arthritis, potentially repositions its truncated N-terminus as a function of guanine nucleotide binding. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 254 (2).

Sen, Himanshu and Kaur, Manpreet and Chaudhuri, Saumya Ray (2024) L-Ascorbic Acid Restricts Vibrio cholerae Survival in Various Growth Conditions. MICROORGANISMS, 12 (3).

Sethi, Sunil and Kanaujia, Rimjhim and Yadav, Rakesh and Sharma, Nandita and Dadwal, Rajneesh and Chaudary, Hemant and Kaur, Karamjit and Saini, Aastha and Malhotra, Sakshi and Rathore, Shivali and Bagga, Rashmi (2024) Association of intermediate Nugent Score and bacterial vaginosis with sexually transmitted infections and vulvovaginal candidiasis. INDIAN JOURNAL OF DERMATOLOGY VENEREOLOGY & LEPROLOGY, 90 (3). pp. 296-301.

Singh, A. D. M. and Sundharam, S. S. and Midha, V. and Singh, D. and Mahajan, R. and Krishnamurthi, S. and Sood, A. (2024) Gut microbiota profiling and disease course in patients with ulcerative colitis in clinical remission. JOURNAL OF CROHNS & COLITIS, 18 (1). I2139-I2141.

Singh, Deeksha and Pal, Shilpee and Subramanian, Srikrishna and Manickam, Natesan (2024) Characterization and complete genome analysis of Klebsiella phage Kp109 with lytic activity against Klebsiella pneumoniae. VIRUS GENES, 60. pp. 222-234.

Singh, Deeksha and Pal, Shilpee and Subramanian, Srikrishna and Manickam, Natesan (2024) Comparative genomics of an extensively drug resistant strain Klebsiella pneumoniae IITR008 with international high-risk clonal lineage ST147 isolated from river water. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 117 (57).

Singh, Latika and Karthikeyan, Subramanian and Thakur, Krishan Gopal (2024) Biochemical and structural characterization reveals Rv3400 codes for β-phosphoglucomutase in Mycobacterium tuberculosis. PROTEIN SCIENCE, 33 (4).

Singh, Rahul and Manna, Souvik and Nandanwar, Hemraj and Purohit, Rituraj (2024) Bioactives from medicinal herb against bedaquiline resistant tuberculosis: removing the dark clouds from the horizon. MICROBES AND INFECTION, 26 (3).

Singh, Shweta and Thakran, Rinku and Kaushal, Ankur and Saini, Reena and Saini, Adesh and Datta, Sonal (2024) Crispr-Cas based biosensing: A fast-expanding molecular diagnostic tool. MICROCHEMICAL JOURNAL, 200.

Srivastava, Nandita and Choudhury, Anirban Roy (2024) Thermo-reversible self-assembled novel gellan gum hydrogels containing amino acid biogelators with antibacterial activity. CARBOHYDRATE POLYMERS, 324.

T

Tandel, Nikunj and Patel, Digna and Thakkar, Mansi and Shah, Jagrut and Tyagi, Rajeev K. and Dalai, Sarat K. (2024) Poly(I:C) and R848 ligands show better adjuvanticity to induce B and T cell responses against the antigen(s). HELIYON, 10 (5).

V

Verma, Himanshu and Mihooliya, Kanti N. and Nandal, Jitender and Sahoo, Debendra K. (2024) Studies on a new antimicrobial peptide from Vibrio proteolyticus MT110. PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY, 54 (2). pp. 193-206.

Verma, Nandini and Riyaz, Mohammad and Kaur, Gurkeerat and Negi, Preeti and Ghawri, Harshita and Raj, Khem (2024) Anticandidal Efficacy of Green Synthesized Silver Nanoparticles Using Trans-Himalayan Plant Extracts Against Drug Resistant Clinical Isolates of Candida auris. INDIAN JOURNAL OF MICROBIOLOGY.

Verma, Neha and Sharma, Tina and Bhardwaj, Anshu and Vemuluri, Venkata Ramana (2024) Comparative genomics and characterization of a multidrug-resistant Acinetobacter baumannii VRL-M19 isolated from a crowded setting in India. INFECTION GENETICS AND EVOLUTION, 118.

W

Walia, Kshitiz and Sharma, Abhishek and Paul, Sankalita and Chouhan, Priya and Kumar, Gaurav and Ringe, Rajesh and Sharma, Mahak and Tuli, Amit (2024) SARS-CoV-2 virulence factor ORF3a blocks lysosome function by modulating TBC1D5-dependent Rab7 GTPase cycle. NATURE COMMUNICATIONS, 15 (1).

Y

Yadav, Amit and Teware, Ruchi and Bhatt, Agrima and Bhavsar, Yash and Maurya, Akanksha and Thorat, Vipool and Vemuluri, Venkata Ramana and Kirdat, Kiran (2024) Ureibacillus aquaedulcis sp. nov., isolated from freshwater well and reclassification of Lysinibacillus yapensis and Lysinibacillus antri as Ureibacillus yapensis comb. nov. andUreibacillus antri comb. Nov. ARCHIVES OF MICROBIOLOGY, 206 (5).

Yadav, Pooja and Das, Joyasree and Sundharam, Shiva S. and Krishnamurthi, Srinivasan (2024) Analysis of Culturable Bacterial Diversity of Pangong Tso Lake via a 16S rRNA Tag Sequencing Approach. MICROORGANISMS, 12 (2).

A

Akhtar, Akil and Lata, Madhu and Sunsunwal, Sonali and Yadav, Amit Kumar and Lnu, Kajal and Subramanian, Srikrishna and Ramya, T N C (2023) New carbohydrate binding domains identified by phage display based functional metagenomic screens of human gut microbiota. Nature communications, 6 (1). ISSN 2041-1723

Amin, Tanzeeba and Sharma, Rajneesh Paul and Mir, Khalid Bashir and Slathia , Nancy and Chhabra , Sonali and Tsering , Dolma and Kotwal , Pankul and Bhagat, Madhulika and Nandi, Utpal and Parkesh, Raman and Kapoor, Kamal K and Goswami, Anindya (2023) Quinoxalinone substituted pyrrolizine (4h)-induced dual inhibition of AKT and ERK instigates apoptosis in breast and colorectal cancer by modulating mitochondrial membrane potential European Journal of Pharmacology. European journal of pharmacology, 957. ISSN 0014-2999

Araya, Christopher Espinoza and Starbird , Ricardo and Prasad, E senthil and Renugopalakrishnan , Venkatesan and Mulchandani , Ashok and Bruce, Barry D and Villarreal , Claudia C (2023) A bacteriorhodopsin-based biohybrid solar cell using carbon-based electrolyte and cathode components. Biochimica Et Biophysica Acta-Bioenergetics , 1864 (4).

Arora , Prachi and Tewary, Suman and Krishnamurthi, Srinivasan and Kumari, Neelam (2023) An experimental setup and segmentation method for CFU counting on agar plate for the assessment of drinking water. Journal of microbiological methods, 214. ISSN 0167-7012

B

Bajaj, Manish and Muddassir, Mohd and Choi, Bumjoon and Singh, Priyanka and Park, Jong Bum and Singh, Surjeet and Yadav, Manisha and Kumar, Rajesh and Eom, Kilho and Sharma, Deepak (2023) Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain. International journal of biological macromolecules, 253. ISSN 1879-0003

Bansal , Kavita and Devi, Neha and Aqdas, Mohammad and Kumar, Munish and Agrewala, Javed N and Katare, O P and Sharma, Rohit K. and Wangoo, Nishima (2023) Inorganic gold nanoparticles-TAT hybrid for the effective delivery of doxorubicin into cancer cells. Journal of drug delivery science and technology , 88.

Bashir, Hilal and Singh, Sanpreet and Singh, Raghwendra Pratap and Agrewala, Javed N and Kumar, Rashmi (2023) Age-mediated gut microbiota dysbiosis promotes the loss of dendritic cells tolerance. Aging Cell, 22 (6).

Bhardwaj, Taniya and Gadhave, Kundlik and Kapuganti, Shivani K and Kumar, Prateek and Brotzakis, Z.F and Saumya, Kumar Udit and Nayak, Namyashree and Kumar, Ankur and Joshi , Richa and Mukherjee, Bodhidipra and Bhardwaj, Aparna and Thakur, Krishan Gopal and Garg, Neha and Vendruscolo, Michele and Giri, Rajanish (2023) Amyloidogenic proteins in the SARS-CoV and SARS-CoV-2 proteomes. Nature communications, 14 (1). ISSN 2041-1723

Bhardwaj , Mahipal and Kamble , Pranay and Mundhe , Priyanka and Jindal, Monika and Thakur, Payal and Bajaj, Priyanka (2023) Multifaceted personality and roles of heme enzymes in industrial biotechnology. 3 Biotech, 13 (389). ISSN 2190-572X

C

Chandal, Nishtha and Tambat, Rushikesh and Kalia, Ritu and Kumar, Gautam and Mahey, Nisha and Jachak , Sanjay and Nandanwar, Hemraj (2023) Efflux pump inhibitory potential of indole derivatives as an arsenal against norA over-expressing Staphylococcus aureus. Microbiology Spectrum , 11 (5).

Chandrsekhar, Hridya and Mohapatra, Gayatree and Kajal, Kirti and Singh, Mukesh and Walia, Kshitiz and Rana, Sarika and Kaur, Navneet and Sharma, Sheetal and Tuli, Amit and Das, Prasenjit and Srikanth, Chittur V (2023) SifA SUMOylation governs Salmonella Typhimurium intracellular survival via modulation of lysosomal function. PLoS Pathogens, 19 (9). ISSN 1553-7374

Chaubey, Gaurav Kumar and Dilawari, Rahul and Modanwal, Radheshyam and Talukdar, Sharmila and Dhiman, Asmita and Raje, Chaaya Iyengar and Raje, Manoj (2023) Excess iron aggravates the severity of COVID-19 infection. Free radical biology & medicine, 208. pp. 186-193. ISSN 1873-4596

Chauhan, Neeraj Kumar and Anand, Anjali and Sharma, Arun and Dhiman, Kanika and Gosain, Tannu Priya and Singh, Prashant and Singh, Padam and Khan, Eshan and Chattopadhyay, Gopinath and Kumar, Amit and Sharma, Deepak and Sharma, Tarun Kumar and Singh, Ramandeep (2023) Structural and Functional Characterization of Rv0792c from Mycobacterium tuberculosis: Identifying Small Molecule Inhibitor against HutC Protein. Microbiology spectrum, 11 (1).

Choksket, Stanzin and Rana, Rekha and Patil, Prabhu B and Korpole, Suresh (2023) Lysobacter arvi sp. nov. Isolated from Farmland Soil. Current microbiology, 80 (12). ISSN 1432-0991

Choksket, Stanzin and Sharma, Shikha and ., Harshvardhan and Pal, Vijay and Jain, Ashish and Patil, Prabhu B and Korpole, Suresh and Grover, Vishakha (2023) Evaluation of Human Dental Plaque Lactic Acid Bacilli for Probiotic Potential and Functional Analysis in Relevance to Oral Health. Indian journal of microbiology, 63 (4). pp. 520-532. ISSN 0046-8991

Choudhary, Megha and Bisht, Bhawana and Saini, Jai Kumar and Bharti, . and Singh, Pargat and Bhardwaj, Priya and Dilawari, Rahul and Pinnaka, Anil Kumar and Ray, Pallab and Gupta, Madhu and Sethi, Sunil and Suri, C Raman and Raje, Manoj and Bhalla, Vijayender (2023) Bifunctionalized nanobioprobe based rapid color-shift assay for typhoid targeting Vi capsular polysaccharide. Biosensors & bioelectronics, 228.

Choudhury , Chinmayee and Kumar, Vivek and Kumar, Rakesh (2023) smProdrugs: A repository of small molecule prodrugs. Journal of Medicinal Chemistry , 249.

Colin, Phillippe and Ringe, Rajesh P. and Yasmeen, Anila and Ozorowski, Gabriel and Ketas, Thomas J. and Lee, Wen Hsin and Ward, Andrew B and Mooore, P John and Klasse, Per Johan (2023) Conformational antigenic heterogeneity as a cause of the persistent fraction in HIV-1 neutralization. RETROVIROLOGY.

D

Dadwal, Rajneesh and Sharma, Nandita and Kanaujia, Rimjhim and Malhotra, Sakshi and Chaudhry, Hemant and Rathore, Shivali and Saini, Aastha and Bagga, Rashmi and Mewara, Abhishek and Khurana, Sumeeta and Yadav, Rakesh and Sethi, Sunil (2023) Prevalence of Trichomonas vaginalis by polymerase chain reaction-based molecular method among symptomatic women from Northern India. Indian Journal of Sexually Transmitted Diseases and Aids , 44 (1). pp. 40-44.

Deep, Amar and Singh, Latika and Kaur, Japleen and Velusamy, Maheshwaran and Bhardwaj, Pushpanjali and Singh, Ramandeep and Thakur, Krishan Gopal (2023) Structural insights into DarT toxin neutralization by cognate DarG antitoxin: ssDNA mimicry by DarG C-terminal domain keeps the DarT toxin inhibited. Structure (London, England : 1993), 31 (7). pp. 780-789. ISSN 1878-4186

Dharra, Renu and Sharma, Anil Kumar and Datta , Sonal (2023) Emerging aspects of cytokine storm in COVID-19: The role of proinflammatory cytokines and therapeutic prospects. Cytokine, 169.

Dhiman, Asmita and Talukdar, Sharmila and Chaubey, Gaurav Kumar and Dilawari, Rahul and Modanwal, Radheshyam and Chaudhary, Surbhi and Patidar, Anil and Boradia, Vishant Mahendra and Kumbhar, Pradeep and Raje, Chaaya Iyengar and Raje, Manoj (2023) Regulation of macrophage cell surface GAPDH alters LL-37 internalization and downstream effects in the cell. Journal of Innate Immunity .

Dubey , Ashish Kumar and Sharma, Mohini and ., Parul and Raut, Sachin and Gupta , Pawan and Khatri, Neeraj (2023) Healing wounds, defeating biofilms: Lactiplantibacillus plantarum in tackling MRSA infections. Frontiers in microbiology, 14. ISSN 1664-302X

G

Garg, Harry and Ringe, Rajesh P. and Das, Supankar and Parkash , Suraj and Thakur, Bhuwaneshwar and Delipan, Rathina and Kumar, Ajay and Kulkarni, Kishore and Bansal, Kanika and Patil, Prabhu B and Alam , Tabish and Balam, Babu Nagesh and Meena, Chandan Swaroop and Thakur, Krishan Gopal and Kumar, Ashok and Kumar, Ashwani (2023) UVC-Based Air Disinfection Systems for Rapid Inactivation of SARS-CoV-2 Present in the Air. Pathogens, 12 (3).

Garvey, Gregory J and Anderson , Janket K and Goodrum, Philip E and Tyndall, Kirby H and Cox , L Anthony and Khatami , Mahin and Montor , Jorge Morales and Schoeny , Rita S and Seed , Jennifer G and Tyagi, Rajeev K and Kirman, Christopher R and Hays , Sean M (2023) Weight of evidence evaluation for chemical-induced immunotoxicity for PFOA and PFOS: findings from an independent panel of experts. Critical Review in Toxicology , 53 (1). pp. 34-51.

Gautam, Sakshi and Thakur, Anamika and Rajput, Akanksha and Kumar, Manoj (2023) Anti-Dengue: A Machine Learning-Assisted Prediction of Small Molecule Antivirals against Dengue Virus and Implications in Drug Repurposing. VIRUSES-BASEL, 16 (1).

Gupta, Amit and Kumar, Manoj (2023) An integrative approach toward identification and analysis of therapeutic targets involved in HPV pathogenesis with a focus on carcinomas. Cancer Biomarkers , 36 (1). pp. 32-52.

J

Janhvi, Shreya and Saini, Sikha and Singh, Vaidhvi and Sharma, Tarun Kumar and Rao, Alka (2023) ProGlycProt V3.0: updated insights into prokaryotic glycoproteins and their glycosyltransferases. Glycobiology, 34 (3). ISSN 1460-2423

K

Kakkar, Saloni and Chauhan, Sakshi and Bharti, . and Rohit, Manojkumar and Bhalla, Vijayender (2023) Conformational switching of aptamer biointerfacing graphene-gold nanohybrid for ultrasensitive label-free sensing of cardiac Troponin I. Bioelectrochemistry, 150.

Kakkar, Saloni and Gupta, Payal and Kumar, Navin and Kantipudi, Satish (2023) Progress in Fluorescence Biosensing and Food Safety towards Point-of-Detection (PoD) System. Biosensors, 13 (2).

Kalra, Rashi and Tiwari, Drishti and Dkhar, H Kitdorlang and Bhagyaraj, Ella and Kumar, Rajesh and Bhardwaj, Anshu and Gupta, Pawan (2023) Host factors subverted by Mycobacterium tuberculosis: Potential targets for host directed therapy. International reviews of immunology, 42 (1). pp. 43-70.

Kaur, Amandeep and Rana, Rekha and Bansal, Kanika and Patel, Hitendra K. and Sonti, Ramesh V. and Patil, Prabhu B (2023) Insights into the Diversity of Transcription Activator-Like Effectors in Indian Pathotype Strains of Xanthomonas oryzae pv. oryzae. Phytopathology, 113 (6). pp. 953-959. ISSN 0031-949X

Kaur, Sarabjot and Dadwal, Rajneesh and Nandanwar, Hemraj and Soni, Sanjeev (2023) Limits of antibacterial activity of triangular silver nanoplates and photothermal enhancement thereof for Bacillus subtilis. Journal of Photochemistry and Photobiology B-Biology , 247.

Kaur , Manpreet and Kumar, Rakesh and Katoch, Poonam and Gupta, Reena (2023) Purification and characterization of extracellular lipase from a thermotolerant strain: Bacillus subtilis TTP-06. 3 Biotech, 13 (10). ISSN 2190-572X

Khaleeq , Sara and Sengupta, Nayanika and Kumar, Sahil and Patel, U R and Rajmani, Raju S and Reddy , Poorvi and Pandey , Suman and Singh, Randhir and Dutta, Somnath and Ringe, Rajesh P. and Varadarajan, Raghavan (2023) Neutralizing Efficacy of Encapsulin Nanoparticles against SARS-CoV2 Variants of Concern. Viruses, 15 (2).

Khan, Mohammad Suhail and Jakob, Virginie and Singh, Randhir and Rajmani, Raju S and Kumar, Sahil and Lemonie , Celine and Kleanthous , Harry and Ringe, Rajesh P. and Dubois , Patrice M and Varadarajan, Raghavan (2023) Enhancing Immunogenicity of a Thermostable, Efficacious SARS-CoV-2 Vaccine Formulation through Oligomerization and Adjuvant Choice. Pharmaceutics, 15 (12).

Kumar, Ajay and Boradia, Vishant Mahendra and Mahajan, Apurwa and Kumaran , S and Raje , Maonj and Raje, Chaaya Iyengar (2023) Mycobacterium tuberculosis H37Rv enolase (Rv1023)- expression, characterization and effect of host dependent modifications on protein functionality. Biochimie, 214. pp. 102-113. ISSN 0300-9084

Kumar, Ish and Sagar, Amin and Dhiman, Kanika and Bethel , Christopher R and Hujer , Andrea M and Carifi , Justin and ., Ashish and Bonomo , Robert A (2023) Insights into dynamic changes in ADC-7 and P99 cephalosporinases using small angle x-ray scattering (SAXS). Journal of Biomolecular Structure and Dynamics, 14. pp. 1-13. ISSN 0739-1102

Kumar, Nirmal and Taily, Irshad Maajid and Singh, Charandeep and Kumar, Sahil and Rajmani, Raju S and Chakraborti, Debajyoti and Sharma, Anshul and Singh, Priyanka and Thakur, Krishan Gopal and Varadarajan, Raghavan and Ringe, Rajesh P. and Banerjee, Prabal and Banerjee, Indranil (2023) Identification of diphenylurea derivatives as novel endocytosis inhibitors that demonstrate broad-spectrum activity against SARS-CoV-2 and influenza A virus both in vitro and in vivo. Plos Pathogens , 19 (5).

Kumar, Pankaj and Kaur, Jaswinder and Kumari, Sumeeta and Paliwal, Sakshi and Berry, Shiwani and Pinnaka, Anil Kumar and Bhalla, Aman (2023) Aroyl-isothiocyanates/isoselenocyanates as precursors to obtain novel cis-3-aroyl-thiourea/urea-β-lactams: design, synthesis, docking and biological evaluation. New Journal of Chemistry, 48. pp. 67-78.

Kumar, Rahul and Pathania, Vikas and Kumar, Shashi and Kumar, Mahender and Nandanwar, Hemraj and Maurya, Sushil K (2023) Synthesis of novel ciprofloxacin-avibactam conjugates for the development of second-generation non-β-lactam-β-lactamase inhibitors. Bioorganic & Medicinal Chemistry Letters , 88.

Kumar, Reetesh and Srivastava, Yogesh and Maji, Somnath and Siddiqui, Seemab and Tyagi, Rajeev Kumar and Muthuramalingam, Pandiyan and Singh, Sunil Kumar and Tiwari, Savitri and Verma, Geetika and Thomazella, Daniela Paula de Toledo and Shin, Hyunsuk and Prajapati, Dinesh Kumar and Rai, Pankaj Kumar and Beura , Samir Kumar and Panigrahi, Abhishek Ramachandra and Moraes , Fabio Rogerio de and Rao , Pasupuleti Visweswara (2023) In silico evaluation of natural compounds to confirm their anti-DNA gyrase activity. Nucleus India, 66. pp. 167-182.

Kumar, Reetesh and Srivastava, Yogesh and Muthuramalingam, Pandiyan and Singh, Kumar Sunil and Verma, Geetika and Tiwari, Savitri and Tandel, Nikunj and Beura, Kumar Samir and Panigrahi, Ramachandra Abhishek and Maji, Somnath and Sharma, Prakriti and Rai, Kumar Pankaj and Prajapati , Kumar Dinesh and Shin , Hyunsuk and Tyagi, Rajeev K (2023) Understanding Mutations in Human SARS-CoV-2 Spike Glycoprotein: A Systematic Review & Meta-Analysis. Viruses Basel , 15 (4).

Kumar, Sachin and Verma, Nitish Kumar and Basotra, Sandal Deep and Sharma, Divya and Prasad , GS and Bhattacharyya, Mani Shankar (2023) Harnessing dual applications of a novel ascomycetes yeast, Starmerella cerana sp. nov., as a biocatalyst for stereoselective ketone reduction and biosurfactant production. Frontiers in bioengineering and biotechnology, 11. ISSN 2296-4185

Kumar, Sahil and Delipan, Rathina and Chakraborti, Debajyoti and Kanjo, Kawkab and Singh, Randhir and Singh, Nittu and Siddiqui, Samreen and Tyagi, Akansha and Jha, Vinitaa and Thakur, Krishan Gopal and Pandey, Rajesh and Vardarajan, Raghavan and Ringe, Rajesh P. (2023) Mutations in S2 subunit of SARS-CoV-2 Omicron spike strongly influence its conformation, fusogenicity, and neutralization sensitivity. Journal of virology, 97 (11). ISSN 1098-5514

Kumari, Alka and Mihooliya, K. N. and Sahoo, Debendra K and Bhattacharyya, Mani Shankar and Prasad, G S and Pinnaka, Anil Kumar (2023) Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms. Scientific reports, 13 (1). ISSN 2045-2322

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Mavi, Parminder Singh and Singh, Shweta and Kumar, Ashwani (2023) Media component bovine serum albumin facilitates the formation of mycobacterial biofilms in response to reductive stress. BMC microbiology, 23 (1). ISSN 1471-2180

Megha, K. B. and S, Reshma and Saeed, Amir and Krishnan, MJ Ajai and Alhawat, Shimona and Rao, Alka (2023) Comprehensive Risk Assessment of Infection Induced by SARS-CoV-2. Molecular Neurobiology.

Mishra, Manish and Yadav, Manisha and Kumar, Sandeep and Kumar, Raj and Sen, Pradip (2023) TIM-3 increases the abundance of type-2 dendritic cells during Leishmania donovani infection by enhancing IL-10 production via STAT3. Cell death & disease, 14 (5). ISSN 2041-4889

Mukhopadhyay, A and Choudhury, Shubham and Kumar, Manoj (2023) Metaviromic analyses of DNA virus community from sediments of the N-Choe stream, North India. Virus Research, 330.

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Nimma, Ramesh and Kumar, Ajay and Gani, Zahid and Gahlawat, Anuj and Dilawari, Rahul and Rohilla, Kumar Rajesh and Kumbhar, Hemangi and Garg, Prabha and Chopra, Sidharth and Raje, Manoj and Raje, Chaaya Iyengar (2023) Characterization of the enzymatic and multifunctional properties of Acinetobacter baumannii erythrose-4-phosphate dehydrogenase (E4PDH). Microbial pathogenesis, 175. ISSN 0882-4010

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Pal, Mohinder and Yadav , Kumar Vinay and Pal, Pramila and Agarwal, Nisheeth and Rao, Alka (2023) The physiological effect of rimI/rimJ silencing by CRISPR interference in Mycobacterium smegmatis mc2155. Archives of microbiology, 205 (5). ISSN 0302-8933

Pande, Akshara and Patiyal, Sumeet and Lathwal, Anjali and Arora, Chakit and Kaur, Dilraj and Dhall, Anjali and Mishra, Gaurav and Kaur, Harpreet and Sharma, Neelam and Jain, Shipra and Usmani, Salman Sadullah and Agrawal, Piyush and Kumar, Rajesh and Kumar, Vinod and Prasad, G S (2023) Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models. Journal of Computational Biology , 30 (2). pp. 204-222.

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Rezgui, Raja and Walia, Ruhi and Sharma, Jyoti and Sidhu, Dwinder and Alshagadali, Khalid and Chaudhuri, Saumya Ray and Saeed, Amir and Dey, Priyankar (2023) Chemically Defined Lactobacillus plantarum Cell-Free Metabolites Demonstrate Cytoprotection in HepG2 Cells through Nrf2-Dependent Mechanism. Antioxidants, 12 (4). ISSN 1557-7716

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Akhtar, Md Naushad and Kumar, Sahil and Sen, Pradip (2022) Leishmania donovani Impedes Antileishmanial Immunity by Suppressing Dendritic Cells via the TIM-3 Receptor. MBIO, 13 (4).

Arora, Prachi and Tewary, Suman and Krishnamurthi, Srinivasan and Kumari, Neelam (2022) Development of a low-cost copper device for inactivation of microorganism in drinking water for human consumption. The Journal of Water Process Engineering , 50.

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Bansal, Kanika and Kumar, Sanjeet (2022) Mutational cascade of SARS-CoV-2 leading to evolution and emergence of omicron variant. VIRUS RESEARCH, 315.

Bansal, Kanika and Kumar, Sanjeet and Patil, Prabhu B (2022) Phylo-Taxonogenomics Supports Revision of Taxonomic Status of 20 Xanthomonas Pathovars to Xanthomonas citri. Phytopathology, 112 (6). pp. 1201-1207. ISSN 0031-949X

Bharti, Meghali and Khurana, Himani and Sharma, Monika and Choksket, Stanzin and Nagar, Shekhar and Yadav, Sheetal and Modeel, Sonakshi and Korpole, Suresh and Negi, Ram Krishan (2022) Taxonomic and genomic characterization of Sporosarcina cyprini sp. nov., moderately tolerant of Cr+6 and Cd+2 isolated from the gut of invasive fish Cyprinus carpio var. communis (Linn., 1758). ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY.

Bommasamudram, Jyothna and Kumar, Pradeep and Kapur, Sonal and Sharma, Deepak and Devappa, Somashekar (2022) Development of Thermotolerant Lactobacilli Cultures with Improved Probiotic Properties Using Adaptive Laboratory Evolution Method. Probiotics and Antimicrobial Proteins.

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Chand, S. and Mihooliya, K. N. and Sahoo, D. K. and Prasad, J. P. and Sharma, G. (2022) L-asparaginase from Bacillus flexus strain SS: Isolation, Screening, Production Process Optimization, Purification, and Anticancer Activity. APPLIED BIOCHEMISTRY AND MICROBIOLOGY, 58 (4). pp. 416-427.

Chaudhary, Deepika and Singh, Avantika and Marzuki, Mardiana and Ghosh, Abhirupa and Kidwai, Saqib and Gosain, Tannu Priya and Chawla, Kiran and Gupta, Sonu Kumar and Agarwal, Nisheeth and Saha, Sudipto and Kumar, Yashwant and Thakur, Krishan Gopal and Singhal, Amit and Singh, Ramandeep (2022) Identification of small molecules targeting homoserine acetyl transferase from Mycobacterium tuberculosis and Staphylococcus aureus. SCIENTIFIC REPORTS, 12 (1).

Chauhan, Neeraj Kumar and Anand, Anjali and Sharma, Arun and Dhiman, Kanika and Gosain, Tannu Priya and Singh, Prashant and Singh, Padam and Khan, Eshan and Chattopadhyay, Gopinath and Kumar, Amit and Sharma, Deepak and Sharma, Tarun Kumar and Singh, Ramandeep (2022) Structural and Functional Characterization of Rv0792c from Mycobacterium tuberculosis: Identifying Small Molecule Inhibitor against HutC Protein. MICROBIOLOGY SPECTRUM, 11 (1).

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Das, Deepjyoti Kumar and Zafar, Mohammad Adeel and Nanda, Sidhanta and Singh, Sanpreet and Lamba, Taruna and Bashir, Hilal and Singh, Pargat and Maurya, Sudeep Kumar and Nadeem, Sajid and Sehrawat, Sharvan and Bhalla, Vijayender and Agrewala, Javed Naim (2022) Targeting dendritic cells with TLR-2 ligand-coated nanoparticles loaded with Mycobacterium tuberculosis epitope induce antituberculosis immunity. JOURNAL OF BIOLOGICAL CHEMISTRY, 298 (12).

Dey, Priyankar and Chaudhuri, Saumya Ray (2022) Cancer-Associated Microbiota: From Mechanisms of Disease Causation to Microbiota-Centric Anti-Cancer Approaches. Biology, 11.

Dey, Priyankar and Chaudhuri, Saumya Ray (2022) The opportunistic nature of gut commensal microbiota. CRITICAL REVIEWS IN MICROBIOLOGY. pp. 1-25.

Dindhoria, Kiran and Monga, Isha and Thind, Amarinder Singh (2022) Computational approaches and challenges for identification and annotation of non-coding RNAs using RNA-Seq. FUNCTIONAL & INTEGRATIVE GENOMICS, 22 (6). pp. 1105-1112.

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Farr, Dustin and Nag, Dhrubajyoti and Chazin , Walter J and Harrison, Simone and Thummel , Ryan and Luo , Xixia and Raychaudhuri, Saumya and Withey, Jeffrey H (2022) Neutrophil-Associated Responses to Vibrio cholerae Infection in a Natural Host Model. Infection and immunity, 90 (3). ISSN 0019-9567

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Garg, Mansi and Sharma, Deepak and Kumar, Rajesh (2022) Analysis of the effect of 1-Allyl-3-Methylimidazolium chloride on thermodynamic stability, folding kinetics, and motional dynamics of horse cytochrome c. BIOPHYSICAL CHEMISTRY, 290.

Garg, Neeraj K. and Tandel, Nikunj and Bhadada, Sanjay Kumar and Tyagi, Rajeev K. (2022) Nanostructured lipid carrier-mediated transdermal delivery of aceclofenac hydrogel present an effective therapeutic approach for inflammatory diseases (vol 12, 713613, 2021). FRONTIERS IN PHARMACOLOGY, 13.

Gaur, Deepika and Kumar, Navinder and Ghosh, Abhirupa and Singh, Prashant and Kumar, Pradeep and Guleria, Jyoti and Kaur, Satinderdeep and Malik , Nikhil and Saha, Sudipto and Nystrom, Thomas and Sharma, Deepak (2022) Ydj1 interaction at nucleotide-binding-domain of yeast Ssa1 impacts Hsp90 collaboration and client maturation. PLoS genetics, 18 (11). ISSN 1553-7404

Gautam, Shashyendra Singh and Singh, Raghwendra Pratap and Karsauliya, Kajal and Sonker, Ashish Kumar and Reddy , Panga Jaipal and Mehrotra , Divya and Gupta, Sameer and Singh, Sudhir and Kumar, Rashmi and Singh, Sheelendra Pratap (2022) Label-free plasma proteomics for the identification of the putative biomarkers of oral squamous cell carcinoma. Journal of proteomics, 259. ISSN 1876-7737

Ghosh, Devanita and Whitworth, David E. and Schafer, Hendrik and Krishnamurthi, Srinivasan and Saha, Pradipta (2022) Editorial: Microbial mitigation of hazardous compounds in agro-ecosystems. FRONTIERS IN MICROBIOLOGY, 13.

Goar, Harsh and Paul , Partha and Khan, Hina and Sarkar, Dibyendu (2022) Molecular Connectivity between Extracytoplasmic Sigma Factors and PhoP Accounts for Coupled Mycobacterial Stress Response. Journal of bacteriology, 204 (06). ISSN 1098-5530

Goel, Nainy and Dhiman, Kanika and Kalidas, Nidhi and Mukhopadhyay, Anwesha and Ashish, Fnu and Bhattacharjee, Souvik (2022) Plasmodium falciparum Kelch13 and its artemisinin-resistant mutants assemble as hexamers in solution: a SAXS data-driven modelling study. The FEBS journal. ISSN 1742-4658

Gosain, Tannu Priya and Singh, Manisha and Singh, Charandeep and Thakur, Krishan Gopal and Singh, Ramandeep (2022) Disruption of MenT2 toxin impairs the growth of Mycobacterium tuberculosis in guinea pigs. MICROBIOLOGY-SGM, 168 (11).

Gupta, Aikan and Sharma, Yogesh and Pawar, Ganesh P. and Ashish , Ashish and Nihalani, D and Chaudhari, Vinod (2022) An efficient and scalable synthesis of Isodesmosine. Journal of Heterocyclic Chemistry, 59 (5). pp. 958-963.

Gupta, Amit Kumar and Kumar, Manoj (2022) Benchmarking and Assessment of Eight De Novo Genome Assemblers on Viral Next-Generation Sequencing Data, Including the SARS-CoV-2. OMICS: A Journal of Integrative Biology, 26 (7).

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Kakkar, Saloni and Chauhan, Sakshi and Bala, Rajni and Bharti, Bala and Kumar, Virendra and Rohit, Manojkumar and Bhalla, Vijayender (2022) Site-directed dual bioprobes inducing single-step nano-sandwich assay for the detection of cardiac troponin I. MICROCHIMICA ACTA, 189 (10).

Kalita, Arunima and Mishra, Rajesh Kumar and Kumar, Vineet and Arora, Amit and Dutta, Dipak (2022) An Intrinsic Alkalization Circuit Turns on mntP Riboswitch under Manganese Stress in Escherichia coli. MICROBIOLOGY SPECTRUM, 10 (5).

Kamboj, Sakshi and Rajput, Akanksha and Rastogi, Amber and Thakur, Anamika and Kumar, Manoj (2022) Targeting non-structural proteins of Hepatitis C virus for predicting repurposed drugs using QSAR and machine learning approaches. Computational and Structural Biology , 20. pp. 3422-3438.

Kaur, Gurpreet and Singh, Sanpreet and Nanda, Sidhanta and Zafar, Mohammad Adeel and Malik, Jonaid Ahmad and Arshi, Mohammad Umar and Lamba, Taruna and Agrewala, Javed Naim (2022) Fiction and Facts about BCG Imparting Trained Immunity against COVID-19. VACCINES, 10 (7).

Kaur, Sarabjot and Tambat, Rushikesh and Pathania, Vikas and Nandanwar , Hemraj and Soni, Sanjeev (2022) Photo-thermally enhanced antimicrobial efficacy of silver nanoplates against Gram-negative, Gram-positive bacterial and fungal pathogens. Journal of applied microbiology. ISSN 1364-5072

Kaur , Bhupinder and Kumar, Nitish and Chawla, Sonam and Sharma, Deepika and Korpole , Suresh and Sharma, Rajni and Patel, Manoj K and Chopra, Kanwaljit and Chaurasia, Om Prakash and Saxena, Shweta (2022) A comparative study of in-vitro and in-silico anti-candidal activity and GC-MS profiles of snow mountain garlic vs. normal garlic. Journal of applied microbiology. ISSN 1364-5072

Khan, Hina and Paul, Partha and Sevalkar, Ritesh Rajesh and Kachhap, Sangita and Singh, Balvinder and Sarkar, Dibyendu (2022) Convergence of two global regulators to coordinate expression of essential virulence determinants of Mycobacterium tuberculosis. ELIFE, 11.

Khatri, Bhavesh and Pramanick, Ishika and Malladi , Sameer Kumar and Rajmani, Raju S and Kumar, Sahil and Ghosh , Pritha and Sengupta, Nayanika and Rahisuddin, R and Kumar , Narender and Kumaran , S and Ringe, Rajesh P and Varadarajan, Raghavan and Dutta, Somnath and Chatterjee, Jayanta (2022) A dimeric proteomimetic prevents SARS-CoV-2 infection by dimerizing the spike protein. Nature Chemical Biology .

Kumar, Gaurav and Chawla, Prateek and Dhiman , Neha and Chadha, Sanya and Sharma, Sheetal and Sethi , Kanupriya and Sharma, Mahak and Tuli, Amit (2022) RUFY3 links Arl8b and JIP4-Dynein complex to regulate lysosome size and positioning. Nature communications, 13 (1). ISSN 2041-1723

Kumar, Pravin and Verma, Ashish and Sundharam, Shiva S. and Ojha, Kumar Anup and Krishnamurthi, Srinivasan (2022) Exploring Diversity and Polymer Degrading Potential of Epiphytic Bacteria Isolated from Marine Macroalgae. Microorganisms, 10 (12).

Kumar, Rajesh and Sharma, Deepak and Kumar, Navinder and Kumari, Beeta and Shabnam, . and Kumar, Sanjeev and Kumar, Rajesh (2022) Substitution of carbonate by non-physiological synergistic anion modulates the stability and iron release kinetics of serum transferrin. Biochimica et biophysica acta, 1871 (1). ISSN 0006-3002

Kumar, Sanjeet and Bansal, Kanika and Sethi, Santosh Kumar (2022) Comparative genomics analysis of genus Leuconostoc resolves its taxonomy and elucidates its biotechnological importance. FOOD MICROBIOLOGY, 106.

Kumar, Sanjeet and Bansal, Kanika and Sethi, Santosh Kumar (2022) Reclassification of Streptococcus ilei as a later heterotypic synonym of Streptococcus koreensis based on whole-genome sequence analysis. ARCHIVES OF MICROBIOLOGY, 204 (7).

Kumar, Vineet and Mishra , Rajesh Kumar and Ghose, Debarghya and Kalita, Arunima and Dhiman , Pulkit and Prakash, Anand and Thakur , Nirja and Mitra, Gopa and Chaudhari , Vinod D and Arora, Amit and Dutta, Dipak (2022) Free spermidine evokes superoxide radicals that manifest toxicity. eLife.

Kumar , Sanjeet and Bansal , Kanika (2022) Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study. Virus Research, 308.

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Mahapatra, Sayanta and Sarbahi, Anusha and Madhu, Priyanka and Swasthi, Hema M. and Sharma, Abhishek and Singh, Priyanka and Mukhopadhyay, Samrat (2022) Substoichiometric Hsp104 regulates the genesis and persistence of self-replicable amyloid seeds of Sup35 prion domain. JOURNAL OF BIOLOGICAL CHEMISTRY, 298 (8).

Marepally, Srujan and Sahu, Tejram and Tyagi, Rajeev K. (2022) Editorial: Nanomedicine in Infectious Diseases: Drug Delivery and Vaccines. FRONTIERS IN PHARMACOLOGY, 13.

Mishra, Rahul Chandra and Kalra, Rishu and Dilawari, Rahul and Goel, Mayurika and Barrow , Colin J (2022) Bio-Synthesis of Aspergillus terreus Mediated Gold Nanoparticle: Antimicrobial, Antioxidant, Antifungal and In Vitro Cytotoxicity Studies. Materials, 15 (11).

Moharir, Shivranjani C. and Thota, Sharath Chandra and Goel, Arushi and Thakur, Bhuwaneshwar and Tandel, Dixit and Reddy, S. Mahesh and Vodapalli, Amareshwar and Bhalla, Gurpreet Singh and Kumar, Dinesh and Naruka, Digvijay Singh and Kumar, Ashwani and Tuli, Amit and Suravaram, Swathi and Bingi, Thrilok Chander and Srinivas, M. and Mesipogu, Rajarao and Reddy, Krishna and Khosla, Sanjeev and Harshan, Krishnan H. and Tallapaka, Karthik Bharadwaj and Mishra, Rakesh K. (2022) Detection of SARS-CoV-2 in the air in Indian hospitals and houses of COVID-19 patients. JOURNAL OF AEROSOL SCIENCE, 164.

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Nag, Dhrubajyoti and Farr, Dustin and Raychaudhuri, Saumya and Withey, Jeffrey H. (2022) An adult zebrafish model for adherent-invasive Escherichia coil indicates protection from AIEC infection by probiotic E. coil Nissle. ISCIENCE, 25 (7).

Nalla , Kirankumar and Manda, Naresh Kumar and Dhillon, Harmeet Singh and Kanade, Santosh R and Rokana, Namita and Hess, Matthias and Puniya , Anil Kumar (2022) Impact of Probiotics on Dairy Production Efficiency. Frontiers in microbiology. ISSN 1664-302X

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Pal, Y. and Mayilraj, S. and Krishnamurthi, S. (2022) Uncovering the structure and function of specialist bacterial lineages in environments routinely exposed to explosives. LETTERS IN APPLIED MICROBIOLOGY, 75 (6). pp. 1433-1448.

Pal, Yash and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2022) Exploring the Distinct Distribution of Archaeal Communities in Sites Contaminated with Explosives. Biomolecules , 12 (4).

Pande, Akshara and Patiyal, Sumeet and Lathwal, Anjali and Arora, Chakit and Kaur, Dilraj and Dhall, Anjali and Mishra, Gaurav and Kaur, Harpreet and Sharma, Neelam and Jain, Shipra and Usmani, Salman Sadullah and Agrawal, Piyush and Kumar, Rajesh and Kumar, Vinod and Raghava, Gajendra P. S. (2022) Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models. JOURNAL OF COMPUTATIONAL BIOLOGY.

Patel, Naisargee and Zinzuvadia, Aarushi and Prajapat, Mitali and Tyagi, Rajeev K and Dalai, Sarat (2022) Swertiamarin-mediated immune modulation/adaptation confers protection against Plasmodium berghei. Future Microbiology .

Patidar , Anil and Malhotra, Himanshu and Chaudhary, Surbhi and Kumar, Manoj and Dilawari, Rahul and Chaubey, Gaurav Kumar and Dhiman, Asmita and Modanwal , Radheshyam and Talukdar, Sharmila and Raje , Chaaya Iyengar and Raje, Manoj (2022) Host glyceraldehyde-3-phosphate dehydrogenase-mediated iron acquisition is hijacked by intraphagosomal Mycobacterium tuberculosis. Cellular and Molecular Life Sciences , 79 (1).

Pirhaghi, Mitra and Frank, Signe Andrea and Alam, Parvez and Nielsen, Janni and Sereikaite , Vita and Gupta, Arpit and Stromgaard, Kristian and Andreasen, Maria and Sharma, Deepak and Ali , Akbar Saboury and Otzen , Daniel Erik (2022) A penetratin-derived peptide reduces the membrane permeabilization and cell toxicity of @-synuclein oligomers. Journal of Biological Chemistry, 298 (12). ISSN 0021-9258

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Rajput, Akanksha and Bhamare, Kailash T. and Thakur, Anamika and Kumar, Manoj (2022) Biofilm-i: A Platform for Predicting Biofilm Inhibitors Using Quantitative Structure-Relationship (QSAR) Based Regression Models to Curb Antibiotic Resistance. MOLECULES, 27 (15).

Rana, Rekha and Madhavan, Vishnu Narayanan and Saroha, Tanu and Bansal, Kanika and Kaur, Amandeep and Sonti, Ramesh V. and Patel, Hitendra K. and Patil, Prabhu B. (2022) Xanthomonas indica sp. nov., a Novel Member of Non-Pathogenic Xanthomonas Community from Healthy Rice Seeds. CURRENT MICROBIOLOGY, 79 (10).

Rana, Vibhuti and Singh, Nittu and Nikam, Chaitali and Kambli, Priti and Singh, Pravin Kumar and Singh, Urmila and Jain, Amita and Rodrigues, Camilla and Sharma, Charu (2022) Molecular Epidemiology and Polymorphism Analysis in Drug-Resistant Genes in M. tuberculosis Clinical Isolates from Western and Northern India. Infection and Drug Resistance , 15. pp. 1717-1732.

Randhawa, Vinay and Pathania, Shivalika and Kumar, Manoj (2022) Computational Identification of Potential Multitarget Inhibitors of Nipah Virus by Molecular Docking and Molecular Dynamics. Microorganisms, 10 (6).

Rathore , Yogesh and Shukla , Jaya and Laroiya, Ishita and Deep , Amar and Lakhanpal , Tamanna and Kumar , Rajender and Singh , Harmandeep and Bal, Amanjit and Singh , Gurpreet and Thakur , Krishan Gopal and Mittal , B R (2022) Development 68Ga trastuzumab Fab and bioevaluation by PET imaging in HER2/neu expressing breast cancer patients. Nuclear Medicine Communications , 43 (4). pp. 458-467.

Rawat, Shalini and Chatterjee, Dhruba and Marwaha, Rituraj and Charak, Gitanjali and Kumar, Gaurav and Shaw, Shrestha and Khatter, Divya and Sharma, Sheetal and Heus, Cecilia De and Liv, Nalan and Judith , Klumperman and Tuli, Amit and Sharma, Mahak (2022) RUFY1 binds Arl8b and mediates endosome-to-TGN CI-M6PR retrieval for cargo sorting to lysosomes. Journal of Cell Biology , 222 (1).

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Sarkar, Anindya and Paul, Sathi and Singh, Charandeep and Chowdhury, Nilkanta and Nag, Papri and Das, Swarnava and Kumar, Sahil and Sharma, Anshul and Das, Deepjyoti Kumar and Dutta, Dipak and Thakur, Krishan Gopal and Bagchi, Angshuman and Shriti, Surbhi and Das, Kali P. and Ringe, Rajesh P. and Das, Sampa (2022) A novel plant lectin, NTL-125, interferes with SARS-CoV-2 interaction with hACE2. VIRUS RESEARCH, 315.

Saroha, Tanu and Chaudhry, Vasvi and Patil , Prabhu B (2022) Novel insights into the role of the mobilome in ecological diversification and success of Staphylococcus haemolyticus as an opportunistic pathogen. Microbial Genomics , 8 (1).

Sasan, Sonakshi and Chopra, Tavishi and Gupta, Annah and Tsering, Dolma and Kapoor, Kamal K and Parkesh, Raman (2022) Fluorescence “Turn-Off” and Colorimetric Sensor for Fe2+, Fe3+, and Cu2+ Ions Based on a 2,5,7-Triarylimidazopyridine Scaffold. ACS Omega, 7 (13). pp. 11114-11125.

Sharma, Anupam and Martoliya, Yogita and Mondal, Alok K. (2022) BEM2, a RHO GTPase Activating Protein That Regulates Morphogenesis in S. cerevisiae, Is a Downstream Effector of Fungicidal Action of Fludioxonil. JOURNAL OF FUNGI, 8 (7).

Sharma, Yogesh and Pawar, Ganesh P. and Chaudhari, Vinod (2022) One-Pot Domino Reaction: Direct Access to Polysubstituted 1,4-Benzothiazine 1,1-Dioxide via Water-Gas Shift Reaction Utilizing DMF/H2O. Journal of Organic Chemistry, 88 (1). pp. 701-710.

Singh, Ankit Kumar and Novak, Jurica and Kumar, Adarsh and Singh, Harshwardhan and Thareja, Suresh and Pathak, Prateek and Grishina, Maria and Verma, Amita and Yadav, Jagat Pal and Khalilullah, Habibullah and Pathania, Vikas and Nandanwar, Hemraj and Jaremko, Mariusz and Emwas, Abdul-Hamid and Kumar, Pradeep (2022) Gaussian field-based 3D-QSAR and molecular simulation studies to design potent pyrimidine-sulfonamide hybrids as selective BRAF(V600E) inhibitors. RSC ADVANCES, 12 (46). pp. 30181-30200.

Singh, Anu and Bansal, Kanika and Kumar, Sanjeet and Patil, Prabhu B. (2022) Deep Population Genomics Reveals Systematic and Parallel Evolution at a Lipopolysaccharide Biosynthetic Locus in Xanthomonas Pathogens That Infect Rice and Sugarcane. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 88 (16).

Singh, Prateek and Ujjainiya, Rajat and Prakash, Satyartha and Naushin, Salwa and Sardana, Viren and Bhatheja, Nitin and Singh, Ajay Pratap and Barman, Joydeb and Kumar, Kartik and Gayali, Saurabh and Khan, Raju and Rawat, Birendra Singh and Tallapaka, Karthik Bharadwaj and Anumalla, Mahesh and Lahiri, Amit and Kar, Susanta and Bhosale, Vivek and Srivastava, Mrigank and Mugale, Madhav Nilakanth and Pandey, C. P. and Khan, Shaziya and Katiyar, Shivani and Raj, Desh and Ishteyaque, Sharmeen and Khanka, Sonu and Rani, Ankita and Promila, . and Sharma, Jyotsna and Seth, Anuradha and Dutta, Mukul and Saurabh, Nishant and Veerapandian, Murugan and Venkatachalam, Ganesh and Bansal, Deepak and Gupta, Dinesh and Halami, Prakash M. and Peddha, Muthukumar Serva and Veeranna, Ravindra P. and Pal, Anirban and Singh, Ranvijay Kumar and Anandasadagopan, Suresh Kumar and Karuppanan, Parimala and Rahman, Syed Nasar and Selvakumar, Gopika and Venkatesan, Subramanian and Karmakar, Malay Kumar and Sardana, Harish Kumar and Kothari, Anamika and Parihar, Devendra Singh and Thakur, Anupma and Saifi, Anas and Gupta, Naman and Singh, Yogita and Reddu, Ritu and Gautam, Rizul and Mishra, Anuj and Mishra, Avinash and Gogeri, Iranna and Rayasam, Geethavani and Padwad, Yogendra and Patial, Vikram and Hallan, Vipin and Singh, Damanpreet and Tirpude, Narendra and Chakrabarti, Partha and Maity, Sujay Krishna and Ganguly, Dipyaman and Sistla, Ramakrishna and Balthu, Narender Kumar and Kumar, Kiran A. and Ranjith, Siva and Kumar, B. Vijay and Jamwal, Piyush Singh and Wali, Anshu and Ahmed, Sajad and Chouhan, Rekha and Gandhi, Sumit G. and Sharma, Nancy and Rai, Garima and Irshad, Faisal and Jamwal, Vijay Lakshmi and Paddar, Masroor Ahmad and Khan, Sameer Ullah and Malik, Fayaz and Ghosh, Debashish and Thakkar, Ghanshyam and Barik, S. K. and Tripathi, Prabhanshu and Satija, Yatendra Kumar and Mohanty, Sneha and Khan, Md Tauseef and Subudhi, Umakanta and Sen, Pradip and Kumar, Rashmi and Bhardwaj, Anshu and Gupta, Pawan and Sharma, Deepak and Tuli, Amit and Chaudhuri, Saumya Ray and Krishnamurthi, Srinivasan and Prakash, L. and Rao, Ch and Singh, B. N. and Chaurasiya, Arvindkumar and Chaurasiya, Meera and Bhadange, Mayuri and Likhitkar, Bhagyashree and Mohite, Sharada and Patil, Yogita and Kulkarni, Mahesh and Joshi, Rakesh and Pandya, Vaibhav and Mahajan, Sachin and Patil, Amita and Samson, Rachel and Vare, Tejas and Dharne, Mahesh and Giri, Ashok and Mahajan, Sachin and Paranjape, Shilpa and Sastry, G. Narahari and Kalita, Jatin and Phukan, Tridip and Manna, Prasenjit and Romi, Wahengbam and Bharali, Pankaj and Ozah, Dibyajyoti and Sahu, RaviKumar and Dutta, Prachurjya and Singh, Moirangthem Goutam and Gogoi, Gayatri and Tapadar, Yasmin Begam and Babu, Elapavalooru V. S. S. K. and Sukumaran, Rajeev K. and Nair, Aishwarya R. and Puthiyamadam, Anoop and Valappil, Prajeesh Kooloth and Prasannakumari, Adrash Velayudhan Pillai and Chodankar, Kalpana and Damare, Samir and Agrawal, Ved Varun and Chaudhary, Kumardeep and Agrawal, Anurag and Sengupta, Shantanu and Dash, Debasis (2022) A machine learning-based approach to determine infection status in recipients of BBV152 (Covaxin) whole-virion inactivated SARS-CoV-2 vaccine for serological surveys. COMPUTERS IN BIOLOGY AND MEDICINE, 146.

Singh, Sanpreet and Maurya, Sudeep K. and Aqdas, Mohammad and Bashir, Hilal and Arora, Ashish and Bhalla, Vijayender and Agrewala, Javed N. (2022) Mycobacterium tuberculosis exploits MPT64 to generate myeloid-derived suppressor cells to evade the immune system. CELLULAR AND MOLECULAR LIFE SCIENCES, 79 (11).

Singh, Vipin and Pandey, Shweta and Bhardwaj, Anshu (2022) From the reference human genome to human pangenome: Premise, promise and challenge. FRONTIERS IN GENETICS, 13.

Srivastava, Nandita and Choudhury, Anirban Roy (2022) Microbial Polysaccharide-Based Nanoformulations for Nutraceutical Delivery. ACS OMEGA, 7 (45). pp. 40724-40739.

Srivastava, Nandita and Choudhury, Anirban Roy (2022) Stimuli-Responsive Polysaccharide-Based Smart Hydrogels and Their Emerging Applications. Industrial and Engineering Chemistry Research , 62 (2). pp. 841-866.

Srivastava, Nandita and Kumari, Sumeeta and Kurmi, Shubham and Pinnaka, Anil Kumar and Choudhury, Anirban Roy (2022) Isolation, purification, and characterization of a novel exopolysaccharide isolated from marine bacteria Brevibacillus borstelensis M42. ARCHIVES OF MICROBIOLOGY, 204 (7).

Svec, Pavel and Kralova, Stanislava and Stankova, Eva and Holochova, Pavla and Sedlar, Karel and Koudelkova, Sylva and Krsek, Daniel and Grzesiak, Jakub and Sedo, Ondrej and Vaczi, Peter and Urvashi, . and Gupta, Vipin and Sood , Utkarsh and Lal, Rup and Korpole, Suresh and Sedlacek, Ivo (2022) Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica. International journal of systematic and evolutionary microbiology, 72 (4). ISSN 1466-5034

T

Tambat, Rushikesh and Mahey, Nisha and Chandal, Nishtha and Verma, Dipesh Kumar and Jangra, Manoj and Thakur, Gopal Krishan and Nandanwar, Hemraj (2022) A Microbe-Derived Efflux Pump Inhibitor of the Resistance-Nodulation-Cell Division Protein Restores Antibiotic Susceptibility in Escherichia coli and Pseudomonas aeruginosa. ACS Infectious Diseases , 8 (2). pp. 255-270.

Tandel, Nikunj and Negi, Sushmita and Tyagi, Rajeev K. (2022) NKB cells: A double-edged sword against inflammatory diseases. FRONTIERS IN IMMUNOLOGY, 13.

Thakur, Anamika and Kumar, Manoj (2022) AntiVIRmiR: A repository of host antiviral miRNAs and their expression along with experimentally validated viral miRNAs and their targets. FRONTIERS IN GENETICS, 13.

Thakur, Naveen and Sharma, Amar Nath and Hade, Mangesh Dattu and Chhaya, Ajay and Kumar, Ashwani and Jolly, Ravinder Singh and Dikshit, Kanak L. (2022) New Insights Into the Function of Flavohemoglobin in Mycobacterium tuberculosis: Role as a NADPH-Dependent Disulfide Reductase and D-Lactate-Dependent Mycothione Reductase. Frontiers in Cellular and Infection Microbiology, 11. ISSN 2235-2988

Tiwari, Drishti and Ahuja, Nancy and Kumar, Sumit and Kalra, Rashi and Nanduri, Ravikanth and Gupta, Shalini and Khare, Asheesh K and Bhagyaraj, Ella and Arora, Rashmi and Gupta, Pawan (2022) Nuclear receptor Nr1d1 alleviates asthma by abating GATA3 gene expression and Th2 cell differentiation. Cellular and Molecular Life Sciences, 79 (6).

U

Urvashi, . and Gundawar, Krishna and Sharma, Shikha and Choksket, Stanzin and Sharma, Mohini and Grover, Vishakha and Patil, Prabhu B. and Korpole, Suresh (2022) Lacrimispora defluvii PI-S10-B5A(T) sp. nov., an Obligate Anaerobe, Isolated from an Industrial Waste and Reclassification of Hungatella xylanolytica as Lacrimispora xylanolytica and Clostridium indicum as Lacrimispora indica Comb. nov. CURRENT MICROBIOLOGY, 79 (12).

V

Vasudeva, Gunjan and Singh, Harpreet and Paliwal, Sakshi and Pinnaka, Anil Kumar (2022) Metagenomics: An Approach for Unraveling the Community Structure and Functional Potential of Activated Sludge of a Common Effluent Treatment Plant. FRONTIERS IN MICROBIOLOGY, 13.

Verma, Nitish Kumar and Kumar, Sachin and Prasad, G S and Bhattacharyya, Mani Shankar (2022) Biocatalytic deracemization of racemic naphthyl alcohols by using a novel yeast isolate Rhodotorula kratochvilovae (MTCC 13029). Sustainable Chemistry and Pharmacy, 26.

Verma , Preeti and Varshney, Ritu and Yadav , Shiv Pratap Singh and Kar , Bibekananda and Roy, Partha and Sharma , Ashwani K (2022) SAXS Analysis and Characterization of Anticancer Activity of PNP-UDP Family Protein from Putranjiva roxburghii. Protein Journal, 41. pp. 381-393.

Virk , Karman and Yonezawa , Kento and Choukate , Komal and Singh , Lucky and Shimizu , Nobutaka and Chaudhuri , Barnali (2022) K-edge anomalous SAXS for protein solution structure modeling. Acta crystallographica. Section D, Structural biology, 78. pp. 204-211. ISSN 2059-7983

Y

Yadav, Jyoti and Das, Satyajeet and Karthikeyan, Divyapriya and Chugh, Ravneet and Jyoti, Anupam and Srivastava, Vijay Kumar and Jain, Ajay and Kumar, Sanjit and Sharma, Vinay and Kaushik, Sanket (2022) Identification of Protein Drug Targets of Biofilm Formation and Quorum Sensing in Multidrug Resistant Enterococcus faecalis. Current Protein and Peptide Science , 23 (4). pp. 248-263.

Yadav, Jyoti and Das, Satyajeet and Singh, Suraj and Jyoti, Anupam and Srivastava , Vijay Kumar and Sharma, Vinay and Kumar, Sanjit and Kumar, Sujeet and Kaushik , Sanket (2022) Deciphering the Role of S-adenosyl Homocysteine Nucleosidase in Quorum Sensing Mediated Biofilm Formation. Current protein & peptide science, 23 (4). pp. 211-225. ISSN 1389-2037

Yadav, Shiv Pratap Singh and Yu, Aiying and Zhao, Jingfu and Singh, Jasdeep and Kakkar, Saloni and Chakraborty, Srinivas and Mechref, Yehia and Molitoris, Bruce and Wagner, Mark C. (2022) Glycosylation of a key cubilin Asn residue results in reduced binding to albumin. JOURNAL OF BIOLOGICAL CHEMISTRY, 298 (10).

Yadav, Sukrampal and Singh, Ramandeep and Sundharam, Shiva S. and Chaudhary, Srishti and Krishnamurthi, Srinivasan and Patil, Sunil A. (2022) Geoalkalibacter halelectricus SAP-1 sp. nov. possessing extracellular electron transfer and mineral-reducing capabilities from a haloalkaline environment. ENVIRONMENTAL MICROBIOLOGY, 11. pp. 5066-5081.

Yadav, Vipin Kumar and Awasthi, Poorwa and Behl, Rachna and Kumar, Amit (2022) HSc70 interactome reveal major role of macroautophagy and minor role of chaperone mediated autophagy in K-Ras G12V cell proliferation and survival. JOURNAL OF PROTEOMICS, 264.

A

Ahmed, S and Khan, Mohd S and Gayathri, Savitha and Singh, Randhir and Kumar, Sahil and Patel, U R and Malladi, Sameer Kumar and Rajmani, Raju S and Vuren, P J and Riddell, Shane and Girish, Nidhi and Reddy, P and Upadhyay, A and Ringe, Rajesh P. and Raghavan, V (2021) A Stabilized, Monomeric, Receptor Binding Domain Elicits High-Titer Neutralizing Antibodies Against All SARS-CoV-2 Variants of Concern. Frontiers in immunology. ISSN 1664-3224

Akela, Ajit Kumar and Kumar, Ashwani (2021) Bioenergetic Heterogeneity in Mycobacterium tuberculosis Residing in Different Subcellular Niches. MBIO, 12 (3).

Aqdas, Mohammad and Singh, Sanpreet and Amir, Mohammed and Maurya, Sudeep Kumar and Pahari, Susanta and Agrewala, J N (2021) Cumulative Signaling Through NOD-2 and TLR-4 Eliminates the Mycobacterium Tuberculosis Concealed Inside the Mesenchymal Stem Cells. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 11.

B

Bansal, Kanika and Kaur, Amandeep and Midha, Samriti and Kumar, Sanjeet and Korpole, Suresh and Patil, Prabhu B. (2021) Xanthomonas sontii sp. nov., a non-pathogenic bacterium isolated from healthy basmati rice (Oryza sativa) seeds from India. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. pp. 1935-1947.

Bansal, Kanika and Kumar, Sanjeet and Kaur, Amandeep and Singh, Anu and Patil, Prabhu B. (2021) Deep phylo-taxono genomics reveals Xylella as a variant lineage of plant associated Xanthomonas and supports their taxonomic reunification along with Stenotrophomonas and Pseudoxanthomonas. Genomics, 113. ISSN 1089-8646

Bansal, Kavita and Devi, Neha and Aqdas, Mohammad and Sharma, Rohit K. and Agrewala, J N and Katare, O P and Nishima, Wangoo (2021) Protein transduction domain functionalized gold nanoparticles for effective delivery of potent cytotoxic agent in cancer cells. JOURNAL OF MOLECULAR LIQUIDS, 328 .

Bhando, Timsy and Singh, Satish and Hade, Mangesh Dattu and Kaur, Jagdeep and `Dikshit , Kanak L (2021) Integration of VEK-30 peptide enhances fibrinolytic properties of staphylokinase. Biotechnology and applied biochemistry, 68 (2). pp. 213-220. ISSN 1470-8744

Bharti, Ram and Chopra, Bhupinder Singh and Sachin, Raut and Khatri, Neeraj (2021) Pueraria tuberosa: A Review on Traditional Uses, Pharmacology, and Phytochemistry. Frontiers in pharmacology, 11. ISSN 1663-9812

Bhattacharya, J. and Chandrawacar, A. Singh and Dhiman, K. and Sewall, L. M. and Ozorowski, G. and Cottrell, C. A. and Hingankar, N. and Kumar, R. and Deshpande, S. and Murugavel, K. G. and Ashish, A. and Ward, A. B. (2021) Structural features of a novel HIV-1 Indian clade C trimeric soluble Env SOSIP and the polyclonal neutralizing antibody responses developed in vaccinated rabbits. JOURNAL OF THE INTERNATIONAL AIDS SOCIETY, 24 (1, SI).

Brouwer, Philip J. M. and Antanasijevic, Aleksandar and de Gast, Marlon and Allen, Joel D and Bijl, Tom P. L. and Yasmeen, Anila and Ravichandran, Rashmi and Burger, Judith A. and Ozorowski, Gabriel and Torres, Jonathan L. and LaBranche, Celia and Montefiori, David C. and Ringe, Rajesh P. and Van Gils, Marit J. and Moore, John P. and Klasse, Per Johan and Crispin, Max and King, Neil P. and Ward, Andrew B. and Sanders, Rogier W. (2021) Immunofocusing and enhancing autologous Tier-2 HIV-1 neutralization by displaying Env trimers on two-component protein nanoparticles. NPJ VACCINES, 6 (1). pp. 1-24.

C

Chakraborty, Poushali and Bajeli, Sapna and Kaushal, Deepak and Radotra, Bishan Dass and Kumar, Ashwani (2021) Biofilm formation in the lung contributes to virulence and drug tolerance of Mycobacterium tuberculosis. Nature communications, 12 (1). ISSN 2041-1723

Chaudhari, Ramesh and Tandel, Nikunj and Sahu, Kiran and Negi, Sushmita and Bashir, Hilal and Rupareliya, Arzu and Mishra, Ravi Pn and Dalai, Sarat K. and Tyagi, Rajeev K (2021) Transdermal Immunization of Elastic Liposome-Laden Recombinant Chimeric Fusion Protein of P. falciparum (PfMSP-Fu(24)) Mounts Protective Immune Response. Nanomaterials, 11 (2). pp. 1-23.

Chaudhary, Anita and Bhalla, Sherry and Patiyal, Sumeet and Raghava, G.P.S. and Sahni, Girish (2021) FermFooDb: A database of bioactive peptides derived from fermented foods. CELL PRESS.

Chaudhary, Surbhi and Dhiman, Asmita and Dilawari, Rahul and Chaubey, Gaurav Kumar and Talukdar, Sharmila and Modanwal, Radheshyam and Patidar, Anil and Malhotra, Himanshu and Raje, Chaaya Iyengar and Raje, Manoj (2021) Glyceraldehyde-3-Phosphate Dehydrogenase Facilitates Macroautophagic Degradation of Mutant Huntingtin Protein Aggregates. MOLECULAR NEUROBIOLOGY.

Chaudhary, Surbhi and Dhiman, Asmita and Patidar, Anil and Malhotra, Himanshu and Talukdar, Sharmila and Dilawari, Rahul and Chaubey, Gaurav Kumar and Modanwal, Radheshyam and Raje, Chaaya Iyengar and Raje, Manoj (2021) Moonlighting glyceraldehyde-3-phosphate dehydrogenase (GAPDH) modulates protein aggregation. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, 1867 (10).

Chaudhary, Surbhi and Patidar, Anil and Dhiman, Asmita and Chaubey, Gaurav Kumar and Dilawari, Rahul and Talukdar, Sharmila and Modanwal, Radheshyam and Raje, Manoj (2021) Exposure of a specific pleioform of multifunctional glyceraldehyde 3-phosphate dehydrogenase initiates CD14-dependent clearance of apoptotic cells. CELL DEATH & DISEASE, 12 (10).

Chhabra, Sonali and Kumar, Sunil and Parkesh, Raman (2021) Chemical Space Exploration of DprE1 Inhibitors Using Chemoinformatics and Artificial Intelligence. ACS OMEGA, 6 (22). pp. 14430-14441.

Choudhary, Pravinkumar and Badmalia, Maulik D and Ashish, G and Rao, Alka (2021) Shape-function insights into bifunctional O-GlcNActransferase of Listeria monocytogenes EGD-e. Glycobiology, 31 (3). pp. 275-287. ISSN 1460-2423

Choudhury, Jagrity and Singh, Lucky and Chaudhuri, Barnali (2021) Biophysical Studies of Interaction between Mycobacterial SepF and FtsZ. BIOPHYSICAL JOURNAL, 120 (3). 22A. ISSN 1542-0086

D

Darji, H and Verma , Neha and Lugani, Yogita and Mehrotra, Priyam and Sindhu, DK and Vemuluri, V.R (2021) Polyphasic characterization of and genomic insights into a haloalkali-tolerant Saccharibacillus alkalitolerans sp. nov., that produces three cellulase isozymes and several antimicrobial compounds. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. ISSN 0003-6072

Datta, Sonal (2021) Optimizing Granulocyte Colony-Stimulating Factor Transcript for Enhanced Expression in Escherichia coli. Frontiers in bioengineering and biotechnology, 9. ISSN 2296-4185

Dey, Priyankar and Chaudhuri, Saumya Ray and Efferth, Thomas and Pal, S (2021) The intestinal 3M (microbiota, metabolism, metabolome) zeitgeist - from fundamentals to future challenges. Free radical biology & medicine, 176. pp. 265-285. ISSN 1873-4596

Dubey, Ashish Kumar and Podia , Mansi and Priyanka, Priyanka and Raut , Sachin and Singh, Sanpreet and Pinnaka , Anil Kumar and Khatri , Neeraj (2021) Insight Into the Beneficial Role of Lactiplantibacillus plantarum Supernatant Against Bacterial Infections, Oxidative Stress, and Wound Healing in A549 Cells and BALB/c Mice. Frontiers in pharmacology. ISSN 1663-9812

G

Ganguly, Ashish (2021) Visualizing how inclusion of higher reciprocal space in SWAXS data analysis improves shape restoration of biomolecules: case of lysozyme. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. pp. 1-15.

Gani, Zahid and Boradia, Vishant Mahendra and Kumar, Ajay and Patidar, Anil and Talukdar, Sharmila and Choudhary, Eira and Singh, Ranvir and Agarwal, Nisheeth and Raje, Manoj and Iyengar, Chaaya (2021) Mycobacterium tuberculosis glyceraldehyde-3-phosphate dehydrogenase plays a dual role-As an adhesin and as a receptor for plasmin(ogen). Cellular Microbiology.

Garg, Neeraj K. and Tandel, Nikunj and Bhadada, Sanjay Kumar and Tyagi, Rajeev K. (2021) Nanostructured Lipid Carrier-Mediated Transdermal Delivery of Aceclofenac Hydrogel Present an Effective Therapeutic Approach for Inflammatory Diseases. FRONTIERS IN PHARMACOLOGY, 12.

Gaur, R and Verma, D.K and Kamboj, D.V (2021) Identification of MHC Class I bound peptides of Francisella tularensis Live Vaccine Strain using mass spectrometry. EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES. ISSN 0928-0987

Gaurav, Sachin and Ranjan, Rajiv Kumar and Kuldeep, Jitendra and Dhiman, Kanika and Mahapatra, Pinaki Prasad and Ashish, . and Siddiqi, Mohammad Imran and Ahmed, Shakil (2021) The N-terminus region of Drp1, a Rint1 family protein is essential for cell survival and its interaction with Rad50 protein in fission yeast S.pombe. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 1865 (1).

Grover, Vishakha and Chopra, Priyanka and Mehta, Manjula and Kumari, Sumeeta and Sehgal, Komal and Jain, Rajni and Lal, Rup and Korpole, Suresh (2021) Improvisation and Evaluation of Laterosporulin Coated Titanium Surfaces for dental Applications: An In Vitro Investigation. Indian journal of microbiology, 61. pp. 203-211.

Gupta, Garima and Agarwal, Uday and Kumar, N.R. and Gupta , Pawan (2021) Identification and efficacy of active metabolites of pomegranate fruit peel aqueous extract against sucking pests of rose and their predators. Proceedings of the National Academy of Sciences of the United States of America. pp. 324-335. ISSN 0027-8424

Gupta, Ritika and Kumar, Amit and Kumar, Sandeep and Pinnaka, Anil Kumar and Singhal, Nitin Kumar (2021) Naked eye colorimetric detection of Escherichia coli using aptamer conjugated graphene oxide enclosed Gold nanoparticles. Sensors and Actuators B: Chemical, 329. ISSN 0925-4005

I

Iqbal, Iram K. and Bajeli, Sapna and Sahu, Shivani and Bhat, Shabir Ahmed and Kumar, Ashwani (2021) Hydrogen sulfide-induced GAPDH sulfhydration disrupts the CCAR2-SIRT1 interaction to initiate autophagy. Autophagy. ISSN 1554-8635

J

Jadon, Rajesh Singh and Sharma, Gajanand and Garg, Neeraj and Tandel, Nikunj and Gajbhiye, Kavita and Salve, Rajesh and Gajbhiye, Virendra and Sharma, Ujjawal and Katare, O P and Sharma, Manoj and Tyagi, Rajeev K (2021) Efficient in vitro and in vivo docetaxel delivery mediated by pH-sensitive LPHNPs for effective breast cancer therapy. COLLOIDS AND SURFACES B-BIOINTERFACES, 203. ISSN 0927-7765

K

Kalra, Rashi and Conlan, Xavier A and Areche, Carlos and Dilawari, Rahul and Goel, Mayurika (2021) Metabolite Profiling of the Indian Food Spice Lichen, Pseudevernia furfuracea Combined With Optimised Extraction Methodology to Obtain Bioactive Phenolic Compounds. Frontiers in pharmacology, 12. ISSN 1663-9812

Kalra, Rashi and Tiwari, Drishti and Dkhar, H Kitdorlang and Bhagyaraj, Ella and Kumar, Rakesh and Bhardwaj, Anshu and Gupta, Pawan (2021) Host factors subverted by Mycobacterium tuberculosis: Potential targets for host directed therapy. International reviews of immunology. ISSN 1563-5244

Kapoor, Srajan and Kodesia, Akriti and Kalidas, Nidhi and Ganguly, Ashish and Thakur, Krishan Gopal (2021) Structural characterization of Myxococcus xanthus MglC, a component of the polarity control system, and its interactions with its paralog MglB. JOURNAL OF BIOLOGICAL CHEMISTRY, 296.

Kaur, Amandeep and Rana, Rekha and Saroha, Tanu and Patil, Prabhu B. (2021) Discerning the role of a functional arsenic- resistance cassette in the evolution and adaptation of a rice pathogen. MICROBIAL GENOMICS, 7 (7).

Kaur, Harsimran and Sasan, Soorya Partap and Yadav, Anita and Martoliya, Yogita and Mondal, Alok K. (2021) Distinct role of HAMP and HAMP-like linker domains in regulating the activity of Hik1p, a hybrid histidine kinase 3 from Magnaporthe oryzae. MOLECULAR GENETICS AND GENOMICS, 296 (5). pp. 1135-1145.

Kaur, Tejinder and Shukla, Bhupendra Nath and Yadav, Vinay Kumar and Kulkarni, Mahesh J. and Rao, Alka (2021) Comparison of glycoprofiles of rituximab versions licensed for sale in India and an analytical approach for quality assessment. JOURNAL OF PROTEOMICS, 244.

Kaushal, Shimayali and Pinnaka, Anil Kumar and Soni, Sanjeev and Singhal, Nitin Kumar (2021) Antibody assisted graphene oxide coated gold nanoparticles for rapid bacterial detection and near infrared light enhanced antibacterial activity. Sensors and Actuators B: Chemical, 329. ISSN 0925-4005

Kaushik, Abhishek and Rahisuddin, R. and Saini, Neha and Singh, Ravi P. and Kaur, Rajveer and Koul, Sukirte and Kumaran, S. (2021) Molecular mechanism of selective substrate engagement and inhibitor disengagement of cysteine synthase. JOURNAL OF BIOLOGICAL CHEMISTRY, 296.

Khairnar, Aasawari and Sunsunwal, Sonali and Babu Chodisetti, P and Ramya, T N C (2021) Novel serine/threonine-O-glycosylation with N-acetylneuraminic acid and 3-deoxy-D-manno-octulosonic acid by bacterial flagellin glycosyltransferases. Glycobiology, 31 (3). pp. 288-306. ISSN 1460-2423

Khatri , Bhavesh and Raghunathan, S and Chakraborti, S and Rahisuddin, R. and Kumaran, S. and Tadala, R and Wagh, P and Priyakumar, U.D. and Chatterjee, J (2021) Desolvation of Peptide Bond by O to S Substitution Impacts Protein Stability. Angewandte. International Edition.

Klionsky, Daniel J and Abdel-Aziz, Amal Kama and Abdelfatah, Sara (2021) Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy, 17 (1). pp. 1-382. ISSN 1554-8635

Kumar, Abhinit and Loharch, Saurabh and Kumar, Sunil and Ringe, P. Rajesh and Parkesh, Raman (2021) Exploiting cheminformatic and machine learning to navigate the available chemical space of potential small molecule inhibitors of SARS-CoV-2. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19. pp. 424-438.

Kumar, Narender and Gupta, Amit Kumar and Sudan, Sarabjeet Kour and Pal, Deepika and Randhawa, Vinay and Sahni, Girish and Mayilraj, Shanmugam and Kumar, Manoj (2021) Abundance and Diversity of Phages, Microbial Taxa, and Antibiotic Resistance Genes in the Sediments of the River Ganges Through Metagenomic Approach. Microbial drug resistance (Larchmont, N.Y.). ISSN 1931-8448

Kumar, Rajesh and Deshpande, Suprit and Sewall, Leigh M and Ozorowski, Gabriel and Cottrell, Christopher and Lee, Wwn-Hsin and Holden, Lauren G and Richey , Sara T and Chandrawacar, Antra Singh and Dhiman, Kanika and Ashish, Fnu and Kumar, Vivek and Ahmed, S and Hingankar, Nitin and Kumar, Naresh and Murugavel, Kailapuri G. and Srikrishnan, AK and Sok, Devin and Ward, Andrew B and Bhattacharya, Jayanta (2021) Elicitation of potent serum neutralizing antibody responses in rabbits by immunization with an HIV-1 clade C trimeric Env derived from an Indian elite neutralizer. PLoS Pathogens, 17. ISSN 1553-7374

Kumar, Rakesh and Rajput, Neeraj K and Jolly, Bani and Narwade, Amol and Bhardwaj, Anshu (2021) MitoLink: A generic integrated web-based workflow system to evaluate genotype-phenotype correlations in human mitochondrial diseases: Observations from the GenomeAsia Pilot project. Mitochondrion, 61. pp. 54-61. ISSN 1872-8278

Kumar, Vinod and Patiyal, Sumeet and Dhall, Anjali and Sharma, Neelam and Raghava, Gajendra Pal Singh (2021) B3Pred: A Random-Forest-Based Method for Predicting and Designing Blood-Brain Barrier Penetrating Peptides. PHARMACEUTICS, 13 (8).

Kumar, Vinod and Patiyal, Sumeet and Kumar, Rajesh and Sahai, Sukriti and Kaur, Dilraj and Lathwal, Anjali and Raghava, Gajendra P. S. (2021) B3Pdb: an archive of blood-brain barrier-penetrating peptides. BRAIN STRUCTURE & FUNCTION, 226 (8). pp. 2489-2495.

Kumari, Alka and Kumari, Sumeeta and Prasad, G S and Pinnaka, Anil Kumar (2021) Production of Sophorolipid Biosurfactant by Insect Derived Novel Yeast Metschnikowia churdharensis f.a., sp. nov., and Its Antifungal Activity Against Plant and Human Pathogens. Frontiers in microbiology, 12. ISSN 1664-302X

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Lathwal, Anjali and Kumar, Rajesh and Raghava, G.P.S. (2021) In-silico identification of subunit vaccine candidates against lung cancer-associated oncogenic viruses. Computers in Biology and Medicine, 130.

Loharch, Saurabh and Chhabra, Sonali and Kumar, Abhinit and Swarup, Sapna and Parkesh, Raman (2021) Discovery and characterization of small molecule SIRT3-specific inhibitors as revealed by mass spectrometry. BIOORGANIC CHEMISTRY, 110.

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Mahajan, Sonal and Ramya, T N C (2021) Cellulophaga algicola alginate lyase inhibits biofilm formation of a clinical Pseudomonas aeruginosa strain MCC 2081. IUBMB life, 73 (2). pp. 444-462. ISSN 1521-6551

Mahey, Nisha and Tambat, Rushikesh and Verma, Dipesh Kumar and Chandal, Nishtha and Thakur, Krishan Gopal and Nandanwar, Hemraj (2021) Antifungal Azoles as Tetracycline Resistance Modifiers in Staphylococcus aureus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 87 (15).

Mathur, Deepika and Kaur, Harpreet and Dhall, Anjali and Sharma, Naveen and Raghava, Gajendra P S (2021) SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly. COMPUTERS IN BIOLOGY AND MEDICINE, 133. ISSN 0010-4825

Maurya, Ranjan Kumar and Alam, M.A. and Nadeem, Ahmed and Prajesh, Rahul and Choudhury, Megha and Bhalla, Vijayender and Agrawal, Ajay (2021) Sensitivity Enhancement of Electrochemical Biosensor for Point of Care (POC) Applications: Vi Antigen Detection as a Case Study. Journal of the Electrochemical Society, 168 (1).

Mishra, Rahul Chandra and Kalra, Rishu and Dilawari, Rahul and Deshmukh, Sunil Kumar and Barrow, Colin J. and Goel, Mayurika (2021) Characterization of an Endophytic Strain Talaromyces assiutensis, CPEF04 With Evaluation of Production Medium for Extracellular Red Pigments Having Antimicrobial and Anticancer Properties. FRONTIERS IN MICROBIOLOGY, 12.

Mohammad, Aqdas and Maurya, Sudeep K and Pahari, Susanta and Singh, Sanpreet and Khan, Nargis and Sethi, Kanupriya and Kaur, Gurpreet and Agrewala, J N (2021) Immunotherapeutic Role of NOD-2 and TLR-4 Signaling as an Adjunct to Antituberculosis Chemotherapy. ACS applied materials & interfaces. pp. 2999-3008. ISSN 1944-8252

Mullick, Ranajoy and Sutar, Jyoti and Hingankar, Nitin and Deshpande, Suprit and Thakar, Madhuri and Sahay, Seema and Ringe, Rajesh P. and Mukhopadhyay, S and Patil, Ajit and Bichare, Shubhangi and Murugavel, Kailapuri G. and Srikrishnan, AK and Goyal, Rajat and Sok , Devin and Bhattacharya, Jayanta (2021) Neutralization diversity of HIV-1 Indian subtype C envelopes obtained from cross sectional and followed up individuals against broadly neutralizing monoclonal antibodies having distinct gp120 specificities. RETROVIROLOGY, 18. ISSN 1742-4690

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Negi, Sushmita and Saini, Sheetal and Tandel, Nikunj and Sahu, Kiran and Mishra, Ravi P. N. and Tyagi, Rajeev K. (2021) Translating Treg Therapy for Inflammatory Bowel Disease in Humanized Mice. CELLS, 10 (8).

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Pal, Shilpee and Sharma, Gaurav and Subramanian, Srikrishna (2021) Complete genome sequence and identification of polyunsaturated fatty acid biosynthesis genes of the myxobacterium Minicystis rosea DSM 24000(T). BMC GENOMICS, 22 (1).

Pandiyan, Kuppusamy and Kushwaha, Prity and Bagul, Samadhan Y. and Chakdar, Hillol and Madhaiyan, Munusamy and Krishnamurthi, Srinivasan and Kumar, Pravin and Karthikeyan, Nanjappan and Singh, Arjun and Kumar, Murugan and Singh, Udai Bhan and Saxena, Anil Kumar (2021) Halomonas icarae sp. nov., a moderately halophilic bacterium isolated from beach soil in India. International journal of systematic and evolutionary microbiology, 71 (1). ISSN 1466-5034

Patil, Prashant P. and Kumar, Sanjeet and Kaur, Amandeep and Midha, Samriti and Bansal, Kanika and Patil, Prabhu B. (2021) Global transcriptome analysis of Stenotrophomonas maltophilia in response to growth at human body temperature. MICROBIAL GENOMICS, 7 (7).

Patil, Vikas Sudhakar and Lugani, Yogita and Chaudhari, Ravindra Deoram and Karodi, Prachi Pramod and Mane, Pramod Chandrakant and Mehrotra, Priyam and Pawar, Shrikant Prakash and Shouche, Yogesh S and Vemuluri, Venkata Ramana (2021) Description and genomic insights into a multidrug resistant novel bacterium Savagea serpentis sp. nov., isolated from the scats of a vine snake (Ahaetulla nasuta). Antonie van Leeuwenhoek. ISSN 1572-9699

Pinnaka, Anil Kumar and Tanuku, Naga Radha Srinivas and Gupta, Vasundhera and Vasudeva, Gunjan and Pydi, S and Kashyap, N and Behera, S and Ganta, S.K (2021) Marinobacterium alkalitolerans sp. nov., with nitrate reductase and urease activity isolated from green algal mat collected from a solar saltern. JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. ISSN 0003-6072

Pradhan, Gauri and Sneha, J.M. and Sonwane, Babasaheb P and Santhakumari, B and Rao, Alka and Kulkarni, Mahesh (2021) Multiple-parallel-protease digestion coupled with high-resolution mass spectrometry: An approach towards comprehensive peptide mapping of therapeutic mAbs. Journal of proteomics, 232. ISSN 1876-7737

Prajesh, Rahul and Goyal, Vinay and Kakkar, Saloni and Sharma, Jyayashi and Alam, M.A. and Maurya, Ranjan Kumar and Bhalla, Vijayender and Agarwal, A. (2021) Polysilicon Field Effect Transistor Biosensor for the Detection of Cardiac Troponin-I (cTnI). JOURNAL OF THE ELECTROCHEMICAL SOCIETY, 168 (2). ISSN 0013-4651

Prasad, Binod and Richter, Peter and Vadakedath, Nithya and Haag, Ferdinand W. M. and Strauch, Sebastian M. and Mancinelli, Rocco and Schwarzwalder, Achim and Etcheparre,, Emmanuel and Gaume, Nicolas and Lebert, Michael (2021) How the space environment influences organisms: an astrobiological perspective and review. INTERNATIONAL JOURNAL OF ASTROBIOLOGY, 20 (2). pp. 159-177.

Pruitt, RN and Schwessinger, Benjamin and Joe, Anna and Patil, Prabhu B (2021) The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium. Antimicrobial agents and chemotherapy, 1 (6). ISSN 0066-4804

Puri, Anuradhika and Singh, Priyanka and Kumar, Navinder and Kumar, Rajesh and Sharma, Deepak (2021) Tah1, A Key Component of R2TP Complex that Regulates Assembly of snoRNP, is Involved in De Novo Generation and Maintenance of Yeast Prion [URE3]. Journal of molecular biology, 433. ISSN 0022-2836

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Rajeev, Ramisetti and Dwivedi, Ambey Prasad and Sinha, Anunay and Agarwaal, Viplove and Dev, Rachana Roshan and Kar, Anjana and Khosla, Sanjeev (2021) Epigenetic interaction of microbes with their mammalian hosts. Journal of Biosciences, 46 (4).

Rajput, Akanksha and Kumar, Archit and Megha, Kirti and Thakur, Anamika and Kumar, Manoj (2021) DrugRepV: a compendium of repurposed drugs and chemicals targeting epidemic and pandemic viruses. Briefings in Bioinformatics, 22 (2). pp. 1076-1084. ISSN 1467-5463

Rajput, Akanksha and Kumar, Manoj (2021) Anti-Ebola: an initiative to predict Ebola virus inhibitors through machine learning. MOLECULAR DIVERSITY.

Rajput, Akanksha and Thakur, Anamika and Mukhopadhyay, Adhip and Kamboj, Sakshi and Rastogi, Amber and Gautam, Sakshi and Jassal, Harvinder and Kumar, Manoj (2021) Prediction of repurposed drugs for Coronaviruses using artificial intelligence and machine learning. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19. pp. 3133-3148.

Rajput, Akanksha and Thakur, Anamika and Rastogi, Amber and Choudhury, Shubham and Kumar, Manoj (2021) Computational identification of repurposed drugs against viruses causing epidemics and pandemics via drug-target network analysis. COMPUTERS IN BIOLOGY AND MEDICINE, 136.

Randhawa, Vinay and Kumar, Manoj (2021) Analysis of aging-related protein interactome and cross-network module comparisons across tissues provide new insights into aging. COMPUTATIONAL BIOLOGY AND CHEMISTRY, 92.

Randhawa, Vinay and Kumar, Manoj (2021) An integrated network analysis approach to identify potential key genes, transcription factors, and microRNAs regulating human hematopoietic stem cell aging. MOLECULAR OMICS. pp. 967-984.

Rathore, Yogendra S and Shukla, Jinal and Mittal, BR and Singh, G and Gopal, K. and Kumar, R and Bal, Amanjit and Laroiya, I and Lakhanpal, T (2021) Radiolabelled trastuzumab Fab as a theranostic molecule for HER2 positive breast cancers. ANNALS OF ONCOLOGY, 32 (2). ISSN 0923-7534

Roychowdhury, Rupsa and Srivastava, Nandita and Kumari, Sumeeta and Pinnaka, Anil Kumar and Choudhury, Anirban Roy (2021) Isolation of an exopolysaccharide from a novel marine bacterium Neorhizobium urealyticum sp. nov. and its utilization in nanoemulsion formation for encapsulation and stabilization of astaxanthin. LWT, 151.

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Sekhon, Gurprit and Singh, Balvinder and Singh, Ranvir (2021) Role of Cys-298 in specific recognition of glutathione by aldose reductase. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. pp. 1-9.

Sharma, Pooja and Tripathi, Sonam and Vadakedath, Nithya and Chandra, Ram (2021) In-situ toxicity assessment of pulp and paper industry wastewater on Trigonella foenum-graecum L: Potential source of cytotoxicity and chromosomal damage. Environmental Technology & Innovation, 21.

Sidhu, Chandni and Saini, Mohit Kumar and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2021) Arenibacter amylolyticus sp. nov., an amylase-producing bacterium of the family Flavobacteriaceae isolated from marine water in India. International journal of systematic and evolutionary microbiology, 71 (3). ISSN 1466-5034

Singh, Kuljit and Rao, Alka (2021) Probiotics: A potential immunomodulator in COVID-19 infection management. Nutrition Research, 87. pp. 1-12.

Singh, Mona and Thakur, Mony and Mishra, Manish and Vibhuti, Rajkamal and Menon, A.M and Nagda, Girima and Dwivedi, V and Dakal, T.C and Yadav, Vinod (2021) Gene regulation of intracellular adhesion molecule-1 (ICAM-1): A molecule with multiple functions. Immunology letters, 240. pp. 123-136. ISSN 0165-2478

Singh, Raghwendra Pratap and Bashir, Hilal and Kumar, Rashmi (2021) Emerging role of microbiota in immunomodulation and cancer immunotherapy. Seminar in Cancer Biology, 70. pp. 37-52.

Singh, Ravi P. and Saini, Neha and Sharma, Gaurav and Rahisuddin, R. and Patel, Madhuri and Kaushik, Abhishek and Kumaran, S. (2021) Moonlighting Biochemistry of Cysteine Synthase: A Species-specific Global Regulator. Journal of molecular biology, 433 (5). ISSN 0022-2836

Singh, S.S and Sharma , Deepika and Baindara, Piyush and Choksket, Stanzin and Harshvardhan, Harshvardhan and Mandal, Santi M and Grover, Vishakha and Korpole, Suresh (2021) Characterization and Antimicrobial Studies of Iturin-Like and Bogorol-Like Lipopeptides From Brevibacillus spp. Strains GI9 and SKDU10. Frontiers in microbiology. ISSN 1664-302X

Singh, Shelley Sardul and Akhtar, Md. Naushad and Sharma, Deepika and Mandal, Santi M. and Korpole, Suresh (2021) Characterization of Iturin V, a Novel Antimicrobial Lipopeptide from a Potential Probiotic Strain Lactobacillus sp. M31. PROBIOTICS AND ANTIMICROBIAL PROTEINS. pp. 1766-1779.

Singh, Vaidhvi and Rao, Alka (2021) Distribution and diversity of glycocin biosynthesis gene clusters beyond Firmicutes. Glycobiology, 31 (2). pp. 89-102. ISSN 1460-2423

Srivastava, Nandita and Richa, Richa and Choudhury, Anirban Roy (2021) Recent advances in composite hydrogels prepared solely from polysaccharides. COLLOIDS AND SURFACES B-BIOINTERFACES, 205.

Srivastava, Nandita and Choudhury, Anirban Roy (2021) Green Synthesis of pH-Responsive, Self-Assembled, Novel Polysaccharide Composite Hydrogel and Its Application in Selective Capture of Cationic/Anionic Dyes. Frontiers in Chemistry, 9.

Srivastava, Suchita and Kaur, Satinderdeep and Verma, Hemant Kumar and Rani, Suman and Thakur, Manisha and Haldar, Swati and Singh, Jagmohan (2021) Reciprocal relation between reporter gene transcription and translation efficiency in fission yeast. Plasmid, 115. ISSN 1095-9890

Sundararaman, Aravind and Bansal, Kanika and Sidhic, Jameema and Patil, Prabhu and Halami, Prakash M. (2021) Genome of Bifidobacterium longum NCIM 5672 provides insights into its acid-tolerance mechanism and probiotic properties. ARCHIVES OF MICROBIOLOGY. pp. 6109-6118.

sengar, k (2021) Test. Test. (Unpublished)

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Taggar, Ramita and Jangra, Manoj and Dwivedi, Akanksha and Bansal, Kanika and Patil, Prabhu B and Bhattacharyya, Mani Shankar and Nandanwar, Hemraj and Sahoo, Debendra K (2021) Bacteriocin isolated from the natural inhabitant of Allium cepa against Staphylococcus aureus. World Journal of Microbiology & Biotechnology, 37 (2). ISSN 0959-3993

Taggar, Ramita and Singh, Sanpreet and Bhalla, Vijayender and Bhattacharyya, Mani Shankar and Sahoo, Debendra K. (2021) Deciphering the Antibacterial Role of Peptide From Bacillus subtilis subsp. spizizenii Ba49 Against Staphylococcus aureus. FRONTIERS IN MICROBIOLOGY, 12.

Tiwari, Drishti and Gupta, Pawan (2021) Nuclear Receptors in Asthma: Empowering Classical Molecules Against a Contemporary Ailment. Frontiers in immunology, 11. ISSN 1664-3224

Tyagi, Rajeev K and Jacobse, Justin and Li, Jing and Allaman, Margret M. and Otipoby, Kevin L. and Sampson, Erik R. and Wilson, K T and Goettel, Jeremy A. (2021) HLA-Restriction of Human Treg Cells Is Not Required for Therapeutic Efficacy of Low-Dose IL-2 in Humanized Mice. Frontiers in immunology, 12. ISSN 1664-3224

Tyagi, Rajeev K. (2021) Plasmodium falciparum infected humanized mice: a viable preclinical tool. IMMUNOTHERAPY, 13 (16).

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Vasudeva, Gunjan and Sidhu, Chandni and Kalidas, Nidhi and Ganguly, Ashish and Pinnaka, Anil Kumar (2021) Shape-function of a novel metapyrocatechase, RW4-MPC: Metagenomics to SAXS data based insight into deciphering regulators of function. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 188. pp. 1012-1024.

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Yadav, Savita and Shinde, Ranajit Nivrutti and Singh, Suruchi and Karthikeyan, Subramanian and Singh, Balvinder (2021) Structurally disordered C-terminal residues of GTP cyclohydrolase II are essential for its enzymatic activity. Journal of biomolecular structure & dynamics. ISSN 1538-0254

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Zahoor, Irfana and Jan, Farhat and Sharma, Ujjawal and Sahu, Kiran K. and Sharma, Amita and Pareek, Shalini and Shrivastava, Divya and Bisen, Prakash S. (2021) Viburnum nervosum Leaf Extract Mediated Green Synthesis of Silver Nanoparticles: A Viable Approach to Increase the Efficacy of an Anticancer Drug. ANTI-CANCER AGENTS IN MEDICINAL CHEMISTRY, 21 (6). pp. 1266-1274.

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Arora, Kashika and Maheshwari, Neeraj and Sahni, Girish (2020) Design of a thrombin inhibitory staphylokinase based plasminogen activator with anti-reocclusion potential. International journal of biological macromolecules, 144. pp. 791-800. ISSN 1879-0003

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Baindara, P and Nayudu, N and Korpole, S (2020) Whole genome mining reveals a diverse repertoire of lanthionine synthetases and lanthipeptides among the genus Paenibacillus. Journal of applied microbiology, 128 (2). pp. 473-490. ISSN 1365-2672

Bansal, Kanika and Kumar, Sanjeet and Patil, Prabhu B (2020) Phylogenomic Insights into Diversity and Evolution of Nonpathogenic Strains Associated with Citrus. mSphere, 5 (2). e00087-20. ISSN 2379-5042

Bhalla, Sherry and Kaur, Harpreet and Kaur, Rishemjit and Sharma, Suresh and Raghava, G.P.S. (2020) Expression based biomarkers and models to classify early and late-stage samples of Papillary Thyroid Carcinoma. PloS one, 15 (4). e0231629. ISSN 1932-6203

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Chand, Subhash and Mahajan, Richi V and Prasad, Jai Prakash and Sahoo, Debendra K and Mihooliya, Kanti Nandan and Dhar, Mahesh S and Sharma, Girish (2020) A comprehensive review on microbial L-asparaginase: Bioprocessing, characterization and industrial applications. Biotechnology and applied biochemistry. ISSN 1470-8744

Chaudhry, Vasvi and Patil, Prabhu B (2020) Evolutionary insights into adaptation of Staphylococcus haemolyticus to human and non-human niches. Genomics, 112 (2). pp. 2052-2062. ISSN 1089-8646

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Dhall, Anjali and Patiyal, Sumeet and Kaur, Harpreet and Bhalla, Sherry and Arora, Chakit and Raghava, G.P.S. (2020) Computing Skin Cutaneous Melanoma Outcome From the HLA-Alleles and Clinical Characteristics. Frontiers in genetics, 11. p. 221. ISSN 1664-8021

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Hade, Mangesh Dattu and Sethi, Deepti and Datta, Himani and Singh, Sandeep and Thakur, Naveen and Chhaya, Ajay and Dikshit, Kanak L (2020) Truncated Hemoglobin O Carries an Autokinase Activity and Facilitates Adaptation of Under Hypoxia. Antioxidants & redox signaling, 32 (6). pp. 351-362. ISSN 1557-7716

Hira, Princy and Singh, Priya and Pinnaka, Anil Kumar and Korpole, Suresh and Lal, Rup (2020) Taxonomically Characterized and Validated Bacterial Species Based on 16S rRNA Gene Sequences from India During the Last Decade. Indian journal of microbiology, 60 (1). pp. 54-61. ISSN 0046-8991

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Joshi, Amaraja and Thite, Sonia and Dhotre, Dhiraj and Moorthy, Manju and Joseph, Neetha and Ramana, V Venkata and Shouche, Yogesh (2020) Nitrincola tapanii sp. nov., a novel alkaliphilic bacterium from An Indian Soda Lake. International journal of systematic and evolutionary microbiology, 70 (2). pp. 1106-1111. ISSN 1466-5034

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Katoch, Anjula and Choudhury, Anirban Roy (2020) Understanding the rheology of novel guar-gellan gum composite hydrogels.MATERIALS LETTERS, 263.

Kaundal, Soni and Deep, Amar and Kaur, Gundeep and Thakur, Krishan Gopal (2020) Molecular and Biochemical Characterization of YeeF/YezG, a Polymorphic Toxin-Immunity Protein Pair From . Frontiers in microbiology, 11. pp. 1-13. ISSN 1664-302X

Kaur, Amandeep and Bansal, Kanika and Patil, Prabhu B (2020) Extensive genomic rearrangements along with distinct mobilome and TALome is associated with extreme pathotypes of a rice pathogen. Genome biology and evolution. ISSN 1759-6653 (In Press)

Kaur, Harpreet and Dhall, Anjali and Kumar, Rajesh and Raghava, G.P.S. (2020) Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma Using Large-Scale Transcriptomics Data. Frontiers in genetics, 10. p. 1306. ISSN 1664-8021

Kaur, Kamaldeep and Khatri, Indu and Akhtar, Akil and Subramanian, Srikrishna and Ramya, T N C (2020) Metagenomics analysis reveals features unique to Indian distal gut microbiota. PloS one, 15 (4). e0231197. ISSN 1932-6203

Kaur, T and Dahiya, S and Satija, S H and Nawal, S J and Kshetrimayum, N and Ningthoujam, J and Chahal, A K and Rao, Alka(2020) Foldscope as a primary diagnostic tool for oral and urinary tract infections and its effectiveness in oral health education.Journal of microscopy. ISSN 1365-2818

Khanam, Taran and Afsar, Mohammad and Shukla, Ankita and Alam, Faiyaz and Kumar, Sanjay and Soyar, Horam and Dolma, Kunzes and Pasupuleti, Mukesh and Srivastava, Kishore Kumar and Ampapathi, Ravi Sankar and Ramachandran, Ravishankar(2020) M. tuberculosis class II apurinic/ apyrimidinic-endonuclease/3'-5' exonuclease (XthA) engages with NAD+-dependent DNA ligase A (LigA) to counter futile cleavage and ligation cycles in base excision repair. Nucleic acids research. ISSN 1362-4962

Kumar, Vinod and Kumar, Rajesh and Agrawal, Piyush and Patiyal, Sumeet and Raghava, G.P.S. (2020) A Method for Predicting Hemolytic Potency of Chemically Modified Peptides From Its Structure. Frontiers in pharmacology, 11. ISSN 1663-9812

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Lathwal, Anjali and Kumar, Rajesh and Raghava, G.P.S. (2020) Computer-aided designing of oncolytic viruses for overcoming translational challenges of cancer immunotherapy. Drug discovery today. ISSN 1878-5832 (In Press)

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Mihooliya, Kanti N and Nandal, Jitender and Kumari, Alka and Nanda, Sidhanta and Verma, Himanshu and Sahoo, Debendra K(2020) Studies on efficient production of a novel l-asparaginase by a newly isolated IGS-131 and its heterologous expression in . 3 Biotech, 10 (4). p. 148. ISSN 2190-572X

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Patiyal, Sumeet and Agrawal, Piyush and Kumar, Vinod and Dhall, Anjali and Kumar, Rajesh and Mishra, Gaurav and Raghava, G.P.S. (2020) NAGbinder: An approach for identifying N-acetylglucosamine interacting residues of a protein from its primary sequence. Protein science : a publication of the Protein Society, 29 (1). pp. 201-210. ISSN 1469-896X

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Richa, . and Roy Choudhury, Anirban (2020) Synthesis of a novel gellan-pullulan nanogel and its application in adsorption of cationic dye from aqueous medium. Carbohydrate polymers, 227. p. 115291. ISSN 1879-1344

Richa, . and Roy Choudhury, Anirban (2020) pH mediated rheological modulation of chitosan hydrogels. International journal of biological macromolecules, 156. pp. 591-597. ISSN 1879-0003

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Sharma, Vandna and Kumar, Shekhar and Sahni, Girish (2020) Kringles of substrate plasminogen provide a "catalytic switch" in plasminogen to plasmin turnover by Streptokinase. The Biochemical journal, 477 (5). pp. 953-970. ISSN 1470-8728

Shikha, Sristy and Chaudhuri, Saumya Ray and Bhattacharyya, Mani Shankar (2020) Facile One Pot Greener Synthesis of Sophorolipid Capped Gold Nanoparticles and its Antimicrobial Activity having Special Efficacy Against Gram Negative Vibrio cholerae.Scientific reports, 10 (1). p. 1463. ISSN 2045-2322

Singh, Prabhat Ranjan and Anil Kumar, Vijjamarri and Sarkar, Dibyendu (2020) Metabolic switching of during hypoxia is controlled by the virulence regulator PhoP. Journal of bacteriology, 202 (7). e00705-19. ISSN 1098-5530

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Tandel, Nikunj and Joseph, Anish Z and Joshi, Aishwarya and Shrama, Priya and Mishra, Ravi Pn and Tyagi, Rajeev K and Bisen, Prakash S (2020) An evaluation of liposome-based diagnostics of pulmonary and extrapulmonary tuberculosis. Expert review of molecular diagnostics. ISSN 1744-8352

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Urvashi, . and Sharma, Deepika and Sharma, Shikha and Pal, Vijay and Lal, Rup and Patil, Prabhu and Grover, Vishakha and Korpole, Suresh (2020) Bacterial Populations in Subgingival Plaque Under Healthy and Diseased Conditions: Genomic Insights into Oral Adaptation Strategies by sp. Strain DISK7. Indian journal of microbiology, 60 (1). pp. 78-86. ISSN 0046-8991

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Vaid, Bhavna and Chopra, Bhupinder Singh and Raut, Sachin and Sagar, Amin and Badmalia, Maulik D and Ashish, . and Khatri, Neeraj (2020) Antioxidant and Wound Healing Property of Gelsolin in 3T3-L1 Cells. Oxidative medicine and cellular longevity, 2020. p. 4045365. ISSN 1942-0994

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Agrawal, Piyush (2019) Computer aided drug design based on understanding protein-ligand interaction at genome scale. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Agrawal, Piyush and Singh, Harinder and Srivastava, Hemant Kumar and Singh, Sandeep and Kishore, Gaurav and Raghava, G.P.S.(2019) Benchmarking of different molecular docking methods for protein-peptide docking. BMC bioinformatics, 19 (Suppl ). p. 426. ISSN 1471-2105

Anand, Shashi and Ganaie, Arsheed Ahmad and Sharma, Charu (2019) Differential thermal stability, conformational stability and unfolding behavior of Eis proteins from Mycobacterium smegmatis and Mycobacterium tuberculosis. PloS one, 14 (3). e0213933. ISSN 1932-6203

Arora, Kashika and Maheshwari, Neeraj and Sahni, Girish (2019) Design of a thrombin inhibitory staphylokinase based plasminogen activator with anti-reocclusion potential. International journal of biological macromolecules. ISSN 1879-0003

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Bajaj, Priyanka and Mahajan, Ritu (2019) Cellulase and xylanase synergism in industrial biotechnology. Applied microbiology and biotechnology, 103 (21-22). pp. 8711-8724. ISSN 1432-0614

Bhagyaraj, Ella and Ahuja, Nancy and Kumar, Sumit and Tiwari, Drishti and Gupta, Shalini and Nanduri, Ravikanth and Gupta, Pawan(2019) TGF-β induced chemoresistance in liver cancer is modulated by xenobiotic nuclear receptor PXR. Cell cycle (Georgetown, Tex.), 18 (24). pp. 3589-3602. ISSN 1551-4005

Bhalla, Sherry and Kaur, Harpreet and Dhall, Anjali and Raghava, Gajendra P S (2019) Prediction and Analysis of Skin Cancer Progression using Genomics Profiles of Patients. Scientific reports, 9 (1). p. 15790. ISSN 2045-2322

C

Chakraborty, Poushali and Kumar, Ashwani (2019) The extracellular matrix of mycobacterial biofilms: could we shorten the treatment of mycobacterial infections? Microbial cell (Graz, Austria), 6 (2). pp. 105-122. ISSN 2311-2638

Chatterjee, Deepyan and Kaur, Gurkirat and Muradia, Shilpa and Singh, Balvinder and Agrewala, J N (2019) ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity. Scientific reports, 9 (1). p. 3092. ISSN 2045-2322

Chaudhary, Shilpa and Sonkusre, Praveen and Bhasin, K K and Sabherwal, Priyanka and Suri, C Raman (2019) Trace detection of some nitro-explosives using thermal mediated immunochemical defragmented method. Biosensors & bioelectronics, 126. pp. 590-595. ISSN 1873-4235

Chaudhary, Shilpa and Sonkusre, Praveen and Chopra, Adity and Bhasin, K K and Suri, C Raman (2019) UV-FIA: UV-induced fluoro-immunochemical assay for ultra-trace detection of PETN, RDX, and TNT. Analytica chimica acta, 1077. pp. 266-272. ISSN 1873-4324

Chaudhary, Surbhi (2019) Understanding the role of Glyceraldehyde 3- phosphate dehydrogenase in maintaining cellular homeostasis. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Chauhan, Anoop Singh and Kumar, Manoj and Chaudhary, Surbhi and Dhiman, Asmita and Patidar, Anil and Jakhar, Priyanka and Jaswal, Pallavi and Sharma, Kapil and Sheokand, Navdeep and Malhotra, Himanshu and Raje, Chaaya Iyengar and Raje, Manoj(2019) Trafficking of a multifunctional protein by endosomal micro-autophagy: linking two independent unconventional secretory pathways. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. fj201802102R. ISSN 1530-6860

Choudhary, Pravinkumar and Nagar, Rupa and Singh, Vaidhvi and Bhat, Aadil Hussain and Sharma, Yogita and Rao, Alka (2019)ProGlycProt V2.0, a repository of experimentally validated glycoproteins and protein glycosyltransferases of prokaryotes.Glycobiology. ISSN 1460-2423

Choukate, Komal and Gupta, Aanchal and Basu, Brohmomoy and Virk, Karman and Ganguli, Munia and Chaudhuri, Barnali (2019)Higher order assembling of the mycobacterial polar growth factor DivIVA/Wag31. Journal of structural biology. p. 107429. ISSN 1095-8657

D

Deep, Amar (2019) Understanding the molecular basis for substrate specificity and mechanism of action in VapBC, toxin-antitoxin modules, from Mycobacterium tuberculosis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

G

Garg, Gaurav and Ali, Vahab and Singh, Kuljit and Gupta, Parool and Ganguly, Ashish and Sahasrabuddhe, Amogh A and Das, Pradeep (2019) Quantitative secretome analysis unravels new secreted proteins in Amphotericin B resistant Leishmania donovani.Journal of proteomics, 207. p. 103464. ISSN 1876-7737

Gaur, Deepika (2019) Mechanistic insights into the role of cytosolic Hsp70 in regulating Hsp90 chaperone cycle. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Gundawar, Krishna and Kumari, Sumeeta and Sharma, Shikha and Grover, Vishakha and Patil, Prabhu B and Korpole, Suresh (2019)Clostridium indicum sp. nov., a novel anaerobic bacterium isolated from the sludge of an industrial effluent. International journal of systematic and evolutionary microbiology, 69 (3). pp. 672-678. ISSN 1466-5034

Gupta, Ashok Kumar and Chopra, Bhupinder Singh and Vaid, Bhavna and Sagar, Amin and Raut, Sachin and Badmalia, Maulik Dand Ashish, . and Khatri, Neeraj (2019) Protective effects of gelsolin in acute pulmonary thromboembolism and thrombosis in the carotid artery of mice. PloS one, 14 (4). ISSN 1932-6203

Gupta, Vasundhera and Singh, Shelley Sardul and Sidhu, Chandni and Grover, Vishakha and Pinnaka, Anil Kumar and Korpole, Suresh (2019) Virgicin, a novel lanthipeptide from Virgibacillus sp. strain AK90 exhibits inhibitory activity against Gram-positive bacteria. World journal of microbiology & biotechnology, 35 (9). p. 133. ISSN 1573-0972

J

Jain, Rishu and Sharma, Deepak and Kumar, Rakesh and Kumar, Rajesh (2019) Structural, kinetic and thermodynamic characterizations of SDS-induced molten globule state of a highly negatively charged cytochrome c. Journal of biochemistry, 165 (2). pp. 125-137. ISSN 1756-2651

Jangra, Manoj (2019) Exploitation of Microbial Resources for Antimicrobial Compounds and Evaluation of their potential to combat antimicrobial resistance. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Jangra, Manoj and Kaur, Manpreet and Nandanwar, Hemraj (2019) In vitro studies on a natural lantibiotic, paenibacillin: A new-generation antibacterial drug to overcome multidrug-resistance. International Journal of Antimicrobial Agent. (In Press)

Jangra, Manoj and Kaur, Manpreet and Podia, Mansi and Tambat, Rushikesh and Singh, Vidhu and Chandal, Nishtha and Mahey, Nisha and Maurya, Navdezda and Nandanwar, Hemraj (2019) Purification and biological activity of natural variants synthesized by tridecaptin M gene cluster and in vitro drug-kinetics of this antibiotic class. Scientific reports, 9 (1). p. 18870. ISSN 2045-2322

Jangra, Manoj and Kaur, Manpreet and Tambat, Rushikesh and Rana, Rohit and Maurya, Sushil K and Khatri, Neeraj and Ghafur, Abdul and Nandanwar, Hemraj (2019) Tridecaptin M, a New Variant Discovered in Mud Bacterium, Shows Activity against Colistin- and Extremely Drug-Resistant . Antimicrobial agents and chemotherapy, 63 (6). pp. 1-16. ISSN 1098-6596

K

Kalia, Shreya and Roy Choudhury, Anirban (2019) Synthesis and rheological studies of a novel composite hydrogel of xanthan, gellan and pullulan. International journal of biological macromolecules, 137. pp. 475-482. ISSN 1879-0003

Karan, Sumita and Pratap, Bhanu and Ashish, . and Saxena, Ajay K (2019) Low-resolution SAXS and structural dynamics analysis on M. tuberculosis GmhB enzyme involved in GDP-heptose biosynthetic pathway. International journal of biological macromolecules, 136. pp. 676-685. ISSN 1879-0003

Kaur, Dilraj and Patiyal, Sumeet and Sharma, Neelam and Usmani, Salman Sadullah and Raghava, G.P.S. (2019) PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands. Database : the journal of biological databases and curation, 2019. ISSN 1758-0463

Kaur, Gurpreet and Chander, Atul Munish and Kaur, Gurwinder and Maurya, Sudeep Kumar and Nadeem, Sajid and Kochhar, Rakeshand Bhadada, Sanjay Kumar and Agrewala, J N and Mayilraj, Shanmugam (2019) A genomic analysis of Mycobacterium immunogenum strain CD11_6 and its potential role in the activation of T cells against Mycobacterium tuberculosis. BMC microbiology, 19 (1). p. 64. ISSN 1471-2180

Kaur, Harpreet and Bhalla, Sherry and Raghava, Gajendra P S (2019) Classification of early and late stage liver hepatocellular carcinoma patients from their genomics and epigenomics profiles. PloS one, 14 (9). e0221476. ISSN 1932-6203

Kaur, Manpreet and Jangra, Manoj and Singh, Harjodh and Tambat, Rushikesh and Singh, Nittu and Jachak, Sanjay M and Mishra, Sunita and Sharma, Charu and Nandanwar, Hemraj and Pinnaka, Anil Kumar (2019) Pseudomonas koreensis Recovered From Raw Yak Milk Synthesizes a β-Carboline Derivative With Antimicrobial Properties. Frontiers in microbiology, 10. p. 1728. ISSN 1664-302X

Kaur, Navneet and Sinha, Prakash Kumar and Sahni, Girish (2019) Site-specific PEGylation of micro-plasmin for improved thrombolytic therapy through engineering enhanced resistance against serpin mediated inhibition. PloS one, 14 (5). e0217234. ISSN 1932-6203

Khairnar, Aasawari and Sharma, Shailza and Bishnoi, Ritika and Ramya, T N C (2019) Effect of naturally occurring variations of the F-type lectin sequence motif on glycan binding: studies on F-type lectin domains with typical and atypical sequence motifs. IUBMB life, 71 (3). pp. 385-397. ISSN 1521-6551

Khatri, Indu and Sharma, Gaurav and Subramanian, Srikrishna (2019) Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina, and insights into its probiotic properties. BMC microbiology, 19 (1). p. 307. ISSN 1471-2180

Kumar, Ajay and Boradia, Vishant Mahendra and Thakare, Ritesh and Singh, Alok Kumar and Gani, Zahid and Das, Swetarka and Patidar, Anil and Dasgupta, Arunava and Chopra, Sidharth and Raje, Manoj and Raje, Chaaya Iyengar (2019) Repurposing ethyl bromopyruvate as a broad-spectrum antibacterial. The Journal of antimicrobial chemotherapy, 74 (4). pp. 912-920. ISSN 1460-2091

Kumar, Bhupender and Katoch, Anjula and Prasad, Gandham S and Roy Choudhury, Anirban (2019) Understanding the Effect of Impeller Configurations on Pullulan Production by RBF 4A3. Frontiers in bioengineering and biotechnology, 7. p. 223. ISSN 2296-4185

Kumar, Rajesh and Patiyal, Sumeet and Kumar, Vinod and Nagpal, Gandharva and Raghava, G.P.S. (2019) In Silico Analysis of Gene Expression Change Associated with Copy Number of Enhancers in Pancreatic Adenocarcinoma. International journal of molecular sciences, 20 (14). ISSN 1422-0067

Kumar, Rakesh and Mohammad, Ashu and Saini, Reena V and Chahal, Anterpreet and Wong, Chi-Ming and Sharma, Deepak and Kaur, Sukhvir and Kumar, Vikas and Winterbourn, Christine C and Saini, Adesh K (2019) Deciphering the in vivo redox behavior of human peroxiredoxins I and II by expressing in budding yeast. Free radical biology & medicine, 145. pp. 321-329. ISSN 1873-4596

Kumar, Sunil and Patil, Prashant P and Singhal, Lipika and Ray, Pallab and Patil, Prabhu B and Gautam, Vikas (2019) Molecular epidemiology of carbapenem-resistant Acinetobacter baumannii isolates reveals the emergence of bla and bla encoding international clones in India. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 75. p. 103986. ISSN 1567-7257

Kumar, Vignesh and Peter, Joshua Jebakumar and Sagar, Amin and Ray, Arjun and Jha, Mainak Pratim and Rebeaud, Mathieu E and Tiwari, Satyam and Goloubinoff, Pierre and Ashish, . and Mapa, Koyeli (2019) Inter-domain communication suppressing high intrinsic ATPase activity of Sse1 is essential for its co-dissaggregase activity with Ssa1. The FEBS journal. ISSN 1742-4658

Kundu, Debasree (2019) Deciphering mechanism of action of antifungal agents using Saccharomyces cerevisiae as model. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

L

Loharch, Saurabh and Karmahapatra, Vikrant and Gupta, Pawan and Madathil, Rethi and Parkesh, Raman (2019) Integrated Chemoinformatics Approaches Toward Epigenetic Drug Discovery. In: Structural Bioinformatics: Applications in Preclinical Drug Discovery Process. Springer Nature, Switzerland, pp. 247-269.

Loharch, Saurabh and Parkesh, Raman (2019) Epigenetic drug discovery: systematic assessment of chemical space. Future medicinal chemistry, 11 (21). ISSN 1756-8927

M

Mahajan, Sonal (2019) Studies on engineering of Fucolectins and Fucolectin-Mediated targeting of Alginate Lyases to Pseudomonas Biofilms. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Malhotra, Himanshu and Kumar, Manoj and Chauhan, Anoop Singh and Dhiman, Asmita and Chaudhary, Surbhi and Patidar, Anil and Jaiswal, Pallavi and Sharma, Kapil and Sheokand, Navdeep and Raje, Chaaya Iyengar and Raje, Manoj (2019) Moonlighting Protein Glyceraldehyde-3-Phosphate Dehydrogenase: A Cellular Rapid-Response Molecule for Maintenance of Iron Homeostasis in Hypoxia.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology, 52 (3). pp. 517-531. ISSN 1421-9778

Maurya, Navdezda and Jangra, Manoj and Tambat, Rushikesh and Nandanwar, Hemraj (2019) Alliance of Efflux Pumps with β-Lactamases in Multidrug-Resistant Isolates. Microbial drug resistance (Larchmont, N.Y.), 25 (8). pp. 1155-1163. ISSN 1931-8448

Mavi, Parminder Singh and Singh, Shweta and Kumar, Ashwani (2019) Reductive Stress: New Insights in Physiology and Drug Tolerance of . Antioxidants & redox signaling. ISSN 1557-7716

Monga, Isha and Kumar, Manoj (2019) Computational Resources for Prediction and Analysis of Functional miRNA and Their Targetome. Methods in molecular biology (Clifton, N.J.), 1912. pp. 215-250. ISSN 1940-6029

N

Nagar, Rupa and Rao, Alka (2019) In Vitro Synthesis of Bioactive Glycovariants of Enterocin 96, an Antimicrobial Peptide from Enterococcus faecalis. Methods in molecular biology (Clifton, N.J.), 1954. pp. 279-296. ISSN 1940-6029

Nanduri, Ravikanth and Kalra, Rashi and Bhagyaraj, Ella and Chacko, Anuja P and Ahuja, Nancy and Tiwari, Drishti and Kumar, Sumit and Jain, Monika and Parkesh, Raman and Gupta, Pawan (2019) AutophagySMDB: a curated database of small molecules that modulate protein targets regulating autophagy. Autophagy, 15 (7). pp. 1280-1295. ISSN 1554-8635

Negi, Shikha and Das, Deepjyoti Kumar and Pahari, Susanta and Nadeem, Sajid and Agrewala, Javed N (2019) Potential Role of Gut Microbiota in Induction and Regulation of Innate Immune Memory. Frontiers in immunology, 10. p. 2441. ISSN 1664-3224

Negi, Shikha and Pahari, Susanta and Bashir, Hilal and Agrewala, J N (2019) Gut Microbiota Regulates Mincle Mediated Activation of Lung Dendritic Cells to Protect Against . Frontiers in immunology, 10. p. 1142. ISSN 1664-3224

Negi, Shikha and Pahari, Susanta and Das, Deepjyoti Kumar and Khan, Nargis and Agrewala, J N (2019) Curdlan Limits Survival Through STAT-1 Regulated Nitric Oxide Production. Frontiers in microbiology, 10. p. 1173. ISSN 1664-302X

P

Pahari, Susanta and Negi, Shikha and Aqdas, Mohammad and Arnett, Eusondia and Schlesinger, Larry S and Agrewala, Javed N(2019) Induction of autophagy through CLEC4E in combination with TLR4: an innovative strategy to restrict the survival of .Autophagy. pp. 1-23. ISSN 1554-8635

Pal, Yash and Mayilraj, Shanmugam and Paul, Mohit and Schumann, Peter and Krishnamurthi, Srinivasan (2019) Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site. International journal of systematic and evolutionary microbiology, 69 (8). pp. 2555-2564. ISSN 1466-5034

Passi, Anurag and Jolly, Bani and Sharma, Tina and Pandya, Ashma and Bhardwaj, Anshu (2019) Data-Driven Systems Level Approaches for Drug Repurposing: Combating Drug Resistance in Priority Pathogens. In: In Silico Drug Design: Repurposing Techniques and Methodologies. Elsevier Science, USA, pp. 229-253. ISBN 978-0-12-816125-8

Pathania, Shivalika and Randhawa, Vinay and Kumar, Manoj (2019) Identifying potential entry inhibitors for emerging Nipah virus by molecular docking and chemical-protein interaction network. Journal of biomolecular structure & dynamics. pp. 1-18. ISSN 1538-0254

Patidar, Anil (2019) Intracellular trafficking and delivery of iron carrier proteins by Glyceraldehde-3-phosphate dehydrogenase. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Patiyal, Sumeet and Agrawal, Piyush and Kumar, Vinod and Dhall, Anjali and Kumar, Rajesh and Mishra, Gaurav and Raghava, Gajendra P S (2019) NAGbinder: An approach for identifying N-acetylglucosamine interacting residues of a protein from its primary sequence. Protein science : a publication of the Protein Society. ISSN 1469-896X

R

Raghav, Pawan Kumar and Kumar, Rajesh and Kumar, Vinod and Raghava, Gajendra P S (2019) Docking-based approach for identification of mutations that disrupt binding between Bcl-2 and Bax proteins: Inducing apoptosis in cancer cells. Molecular genetics & genomic medicine, 7 (11). e910. ISSN 2324-9269

Rajput, Akanksha and Kumar, Archit and Kumar, Manoj (2019) Computational Identification of Inhibitors Using QSAR Approach Against Nipah Virus. Frontiers in pharmacology, 10. p. 71. ISSN 1663-9812

Richa, . and Roy Choudhury, Anirban (2019) Synthesis and rheological characterization of a novel thermostable quick setting composite hydrogel of gellan and pullulan. International journal of biological macromolecules, 125. pp. 979-988. ISSN 1879-0003

Richa, Richa and Roy Choudhury, Anirban (2019) Exploration of polysaccharide based nanoemulsions for stabilization and entrapment of curcumin. International journal of biological macromolecules. ISSN 1879-0003

S

Saini, Ankita and Mahajan, Sahil and Bhagyaraj, Ella and Kalra, Rashi and Nanduri, Ravikanth and Gupta, Ravi and Khatri, Neerajand Gupta, Pawan (2019) An Accord of Nuclear Receptor Expression in CD4 T Cells in Rheumatoid Arthritis. ImmunoHorizons, 3 (8). pp. 402-411. ISSN 2573-7732

Sajid, Mohammad and Agrewala, J N (2019) Low prevalence of anti-xenobiotic antibodies among the occupationally exposed individuals is associated with a high risk of cancer. Cancer medicine, 8 (1). pp. 246-260. ISSN 2045-7634

Sevalkar, Ritesh Rajesh and Arora, Divya and Singh, Prabhat Ranjan and Singh, Ranjeet and Nandicoori, Vinay K and Karthikeyan, Subramanian and Sarkar, Dibyendu (2019) Functioning of Mycobacterial Heat Shock Repressors Requires the Master Virulence Regulator PhoP. Journal of bacteriology, 201 (12). ISSN 1098-5530

Sidhu, Chandni and Solanki, Vipul and Pinnaka, Anil Kumar and Thakur, Krishan Gopal (2019) Structure Elucidation and Biochemical Characterization of Environmentally Relevant Novel Extradiol Dioxygenases Discovered by a Functional Metagenomics Approach.mSystems, 4 (6). ISSN 2379-5077

Singaraju, G S and Sagar, A and Kumar, A and Samuel, J S and Hazra, J P and Sannigrahi, M K and Yennamalli, R M and Ashish, Fnu and Rakshit, S (2019) Structural basis of the strong cell-cell junction formed by cadherin-23. The FEBS journal. ISSN 1742-4658

Singh, Balveer and Bisht, Kamlesh K and Upadhyay, Udita and Kushwaha, Avinash Chandra and Nanda, Jagpreet Singh and Srivastava, Suchita and Saini, Jai Kumar and Klar, Amar J S and Singh, Jagmohan (2019) Role of Cdc23/Mcm10 in generating the ribonucleotide imprint at the mat1 locus in fission yeast. Nucleic acids research. ISSN 1362-4962

Singh, Harjodh and Kaur, Manpreet and Jangra, Manoj and Mishra, Sunita and Nandanwar, Hemraj and Pinnaka, Anil Kumar (2019)Antimicrobial properties of the novel bacterial isolate Paenibacilllus sp. SMB1 from a halo-alkaline lake in India. Scientific reports, 9 (1). p. 11561. ISSN 2045-2322

Singh, Pargat and Bharti, . and Kumar, Rajesh and Bhalla, Vijayender (2019) Gold nanoparticle triggered siloxane formation for polymerization based amplification in enzyme free visual immunoassay. Analytica chimica acta, 1078. pp. 151-160. ISSN 1873-4324

Singh, Pargat and Kakkar, Saloni and Bharti, . and Kumar, Rajesh and Bhalla, Vijayender (2019) Rapid and sensitive colorimetric detection of pathogens based on silver-urease interactions. Chemical communications (Cambridge, England), 55 (33). pp. 4765-4768. ISSN 1364-548X

Singh, Shweta and Sran, Kulwinder Singh and Pinnaka, Anil Kumar and Roy Choudhury, Anirban (2019) Purification, characterization and functional properties of exopolysaccharide from a novel halophilic Natronotalea sambharensis sp. nov. International journal of biological macromolecules, 136. pp. 547-558. ISSN 1879-0003

Singh, Vipin and Jolly, Bani and Rajput, Neeraj K and Pramanik, Sayan and Bhardwaj, Anshu (2019) MtBrowse: An integrative genomics browser for human mitochondrial DNA. Mitochondrion, 48. pp. 31-36. ISSN 1872-8278

Sran, Kulwinder Singh and Bisht, Bhawana and Mayilraj, Shanmugam and Choudhury, Anirban Roy (2019) Structural characterization and antioxidant potential of a novel anionic exopolysaccharide produced by marine Microbacterium aurantiacum FSW-25.International journal of biological macromolecules. ISSN 1879-0003

Sran, Kulwinder Singh and Sundharam, Shiva S and Krishnamurthi, S and Roy Choudhury, Anirban (2019) Production, characterization and bio-emulsifying activity of a novel thermostable exopolysaccharide produced by a marine strain of Rhodobacter johrii CDR-SL 7Cii. International journal of biological macromolecules, 127. pp. 240-249. ISSN 1879-0003

Srinivasan, Vijaya Bharathi and Rajamohan, Govindan (2019) Genome analysis of urease positive Serratia marcescens, co-producing SRT-2 and AAC(6')-Ic with multidrug efflux pumps for antimicrobial resistance. Genomics, 111 (4). pp. 653-660. ISSN 1089-8646

Sudha Rani, P and Saini, Mohit Kumar and Pinnaka, Anil Kumar and Sampath Kumar, G and Kumar, Shekar and Vemuluri, Venkata Ramana and Tanuku, Naga Radha Srinivas (2019) Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water. International journal of systematic and evolutionary microbiology, 69 (1). pp. 39-45. ISSN 1466-5034

T

Tambat, Rushikesh and Jangra, Manoj and Mahey, Nisha and Chandal, Nishtha and Kaur, Manpreet and Chaudhary, Surbhi and Verma, Dipesh Kumar and Thakur, Krishan Gopal and Raje, Manoj and Jachak, Sanjay and Khatri, Neeraj and Nandanwar, Hemraj(2019) Microbe-Derived Indole Metabolite Demonstrates Potent Multidrug Efflux Pump Inhibition in . Frontiers in microbiology, 10. p. 2153. ISSN 1664-302X

Thakur, Naveen (2019) Molecular Characterization of Mycobacterial Flavohemoglobins. PhD thesis, ACSIR,IMTECH,Chandigarh.

Tuli, Amit and Sharma, Mahak (2019) How to do business with lysosomes: Salmonella leads the way. Current opinion in microbiology, 47. pp. 1-7. ISSN 1879-0364

U

Usmani, Salman Sadullah and Agrawal, Piyush and Sehgal, Manika and Patel, Pradeep Kumar and Raghava, G.P.S. (2019)ImmunoSPdb: an archive of immunosuppressive peptides. Database : the journal of biological databases and curation, 2019. ISSN 1758-0463

V

Vandana, . and Kantipudi, Satish and Maheshwari, Neeraj and Sharma, Sheetal and Sahni, Girish (2019) Cloning and purification of an anti-thrombotic, chimeric Staphylokinase in Pichia pastoris. Protein expression and purification, 162. pp. 1-8. ISSN 1096-0279

Verma, Ashish and Pal, Yash and Ojha, Anup Kumar and Kumari, Munesh and Khatri, Indu and Rameshkumar, N and Schumann, Peter and Dastager, Syed G and Mayilraj, Shanmugam and Subramanian, Srikrishna and Krishnamurthi, Srinivasan (2019)Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov. Systematic and applied microbiology, 42 (3). pp. 360-372. ISSN 1618-0984

Verma, Dipesh Kumar (2019) Structural and functional characterization of human Angiopoietin-like proteins. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Verma, Dipesh Kumar and Baral, Ishita and Kumar, Atul and Prasad, Senthil E and Thakur, Krishan Gopal (2019) Discovery of bacteriorhodopsins in Haloarchaeal species isolated from Indian solar salterns: deciphering the role of the N-terminal residues in protein folding and functional expression. Microbial biotechnology. pp. 1-13. ISSN 1751-7915

Vidyarthi, Aurobind and Agnihotri, Tapan and Khan, Nargis and Singh, Sanpreet and Tewari, Manoj K and Radotra, Bishan D and Chatterjee, Deepyan and Agrewala, Javed N (2019) Predominance of M2 macrophages in gliomas leads to the suppression of local and systemic immunity. Cancer immunology, immunotherapy : CII, 68 (12). pp. 1995-2004. ISSN 1432-0851

A

Agarwal, Sakshi and Tiwari, Prabhakar and Deep, Amar and Kidwai, Saqib and Gupta, Shamba and Thakur, Krishan Gopal and Singh, Ramandeep (2018) System wide analysis unravels differential regulation and in vivo essentiality of VapBC TA systems from Mycobacterium tuberculosis. The Journal of Infectious Diseases. ISSN 0022-1899

Agrawal, Piyush and Bhalla, Sherry and Chaudhary, Kumardeep and Kumar, Rajesh and Sharma, Meenu and Raghava, G.P.S.(2018) In silco Approach for Prediction of Antifungal Peptides. Frontiers in microbiology, 9. p. 323. ISSN 1664-302X

Ahmad, Zeeshan (2018) The role of heme oxygenase-1 and its reaction products in modulation of cellular signalling:New insights into tuberculosis pathogenesis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Anand, Shashi (2018) Biochemical and Biophysical characterization of Eis protein from Mycobacteria. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Anand, Shashi and Sharma, Charu (2018) Glycine-rich loop encompassing active site at interface of hexameric M. tuberculosis Eis protein contributes to its structural stability and activity. International journal of biological macromolecules, 109. pp. 124-135. ISSN 1879-0003

Aqdas, Mohammad (2018) Effect of immunomodulation on the regime of anti-tuberculosis drugs-against Mycobacterium tuberculosis.PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Arya, Subhash B and Kumar, Gaurav and Kaur, Harmeet and Kaur, Amandeep and Tuli, Amit (2018) ARL11 regulates lipopolysaccharide-stimulated macrophage activation by promoting mitogen-activated protein kinase (MAPK) signaling. The Journal of biological chemistry, 293 (25). pp. 9892-9909. ISSN 1083-351X

B

Badmalia, Maulik D and Sharma, Pankaj and Yadav, Shiv Pratap Singh and Singh, Shikha and Khatri, Neeraj and Garg, Renu and Ashish, . (2018) Bonsai Gelsolin Survives Heat Induced Denaturation by Forming β-Amyloids which Leach Out Functional Monomer.Scientific reports, 8 (1). p. 12602. ISSN 2045-2322

Baindara, Piyush and Korpole, Suresh and Grover, Vishakha (2018) Bacteriocins: perspective for the development of novel anticancer drugs. Applied microbiology and biotechnology, 102 (24). pp. 10393-10408. ISSN 1432-0614

Bansal, Kanika (2018) Evolutionary genomics of Xanthomonas citri and its ecological relatives. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Bansal, Kanika and Kumar, Sanjeet and Patil, Prabhu B (2018) Complete Genome Sequence Reveals Evolutionary Dynamics of an Emerging and Variant Pathovar of Xanthomonas euvesicatoria. Genome biology and evolution, 10 (11). pp. 3104-3109. ISSN 1759-6653

Bessa, Cláudia and Soares, Joana and Raimundo, Liliana and Loureiro, Joana B and Gomes, Célia and Reis, Flávio and Soares, Miguel L and Santos, Daniel and Dureja, Chetna and Chaudhuri, Saumya R and Lopez-Haber, Cynthia and Kazanietz, Marcelo G and Gonçalves, Jorge and Simões, Maria F and Rijo, Patrícia and Saraiva, Lucília (2018) Discovery of a small-molecule protein kinase Cδ-selective activator with promising application in colon cancer therapy. Cell death & disease, 9 (2). p. 23. ISSN 2041-4889

Bhagyaraj, Ella and Tiwari, Drishti and Ahuja, Nancy and Nanduri, Ravikanth and Saini, Ankita and Kalra, Rashi and Kumar, Sumitand Janmeja, Ashok Kumar and Gupta, Pawan (2018) A human xenobiotic nuclear receptor contributes to nonresponsiveness ofto the antituberculosis drug rifampicin. The Journal of biological chemistry, 293 (10). pp. 3747-3757. ISSN 1083-351X

Bhardwaj, Amit (2018) Crosstalk between Escherichia Coli B-Clamp, DNA polymerase and DNA Ligase to maintain Genome intergrity.PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Bhardwaj, Amit and Ghose, Debarghya and Thakur, Krishan Gopal and Dutta, Dipak (2018) Escherichia coli β-clamp slows down DNA polymerase I dependent nick translation while accelerating ligation. PloS one, 13 (6). e0199559. ISSN 1932-6203

Bhatt, SA and Iqbal, Iram Khan and Kumar, Ashwani (2018) Quantification of the Metabolic Heterogeneity in Mycobacterial Cells Through the Measurement of the NADH/NAD+ Ratio Using a Genetically Encoded Sensor. Methods in Molecular Biology, 1745. pp. 261-275. ISSN 1064-3745

Bijlani, Swati and Nahar, Anubhav S. and Ganesan, K. (2018) Improved Tet-On and Tet-Off systems for tetracycline-regulated expression of genes in Candida. Current Genetics, 64 (1). pp. 303-316. ISSN 0172-8083

Bishnoi, Ritika and Mahajan, Sonal and Ramya, T N C (2018) An F-type lectin domain directs the activity of Streptosporangium roseum alpha-l-fucosidase. Glycobiology, 28 (11). pp. 860-875. ISSN 1460-2423

C

Carpenter, Sara C D and Mishra, Prashant and Ghoshal, Chandrika and Dash, Prasanta K and Wang, Li and Midha, Samriti and Laha, Gouri S and Lore, Jagjeet S and Kositratana, Wichai and Singh, Nagendra K and Singh, Kuldeep and Patil, Prabhu B and Oliva, Ricardo and Patarapuwadol, Sujin and Bogdanove, Adam J and Rai, Rhitu (2018) A Strain of an Emerging Indian pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene Without Inducing a Clade III Gene and Is Nearly Identical to a Recent Thai Isolate. Frontiers in microbiology, 9. p. 2703. ISSN 1664-302X

Chandel, Neha (2018) Molecular characterization of Chromosomal-Plasmid Borne Antibiotic resistance determinants in Escherichia Coli. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Chander, Atul Munish and Kochhar, Rakesh and Dhawan, Devinder Kumar and Bhadada, Sanjay Kumar and Mayilraj, Shanmugam(2018) Genome sequence and comparative genomic analysis of a clinically important strain CD11-4 of Janibacter melonis isolated from celiac disease patient. Gut Pathogens, 10 (1). ISSN 1757-4749

Chaudhary, Shilpa and Sonkusre, Praveen and Bhasin, K K and Sabherwal, Priyanka and Suri, C Raman (2018) Trace detection of some nitro-explosives using thermal mediated immunochemical defragmented method. Biosensors & bioelectronics, 126. pp. 590-595. ISSN 1873-4235

Cruite, Justin and Succo, Patrick and Raychaudhuri, Saumya and Kull, F Jon (2018) Crystal structure of an inactive variant of the quorum-sensing master regulator HapR from the protease-deficient non-O1, non-O139 Vibrio cholerae strain V2. Acta crystallographica. Section F, Structural biology communications, 74 (Pt 6). pp. 331-336. ISSN 2053-230X

D

Dar, Ahmad Showkat (2018) Development of Computational resources for siRNA Molecule based Therapeutics. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Deep, Amar and Tiwari, Prabhakar and Agarwal, Sakshi and Kaundal, Soni and Kidwai, Saqib and Singh, Ramandeep and Thakur, Krishan Gopal (2018) Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin-antitoxin system: targeting a tRNase to tackle mycobacterial adaptation. Nucleic acids research, 46 (21). pp. 11639-11655. ISSN 1362-4962

Dhaliwal, J and Singh, D P and Singh, S and Pinnaka, Anil Kumar and Boparai, R K and Bishnoi, M and Kondepudi, K K and Chopra, K (2018) Lactobacillus plantarum MTCC 9510 supplementation protects from chronic unpredictable and sleep deprivation-induced behaviour, biochemical and selected gut microbial aberrations in mice. Journal of applied microbiology, 125 (1). pp. 257-269. ISSN 1365-2672

Dhware , Dnyaneshwar Prashant (2018) Studies on acetoin regulatory networks in Vibrio cholerae: lesson from natural variants. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

G

Garg, Renu and Peddada, Nagesh and Dolma, Kunzes and Khatri, Neeraj and Ashish, . (2018) Pregnancy-related hormones, progesterone and human chorionic gonadotrophin, upregulate expression of maternal plasma gelsolin. American journal of physiology. Regulatory, integrative and comparative physiology, 314 (4). R509-R522. ISSN 1522-1490

Gujar, Ravindra and Sen, Pradip (2018) Transforming growth factor-β1 impairs lymph node homing of dendritic cells by downregulating C-type lectin receptor-2 expression. Cytokine, 110. pp. 39-43.

Gupta, Arpit and Puri, Anuradhika and Singh, Prashant and Sonam, Surabhi and Pandey, Richa and Sharma, Deepak (2018) The yeast stress inducible Ssa Hsp70 reduces α-synuclein toxicity by promoting its degradation through autophagy. PLoS genetics, 14 (10). e1007751. ISSN 1553-7404

Gupta, Dinesh and Mathur, Deepika and Mehta, Ayesha and Firmal, Priyanka and Bedi, Gursimran and Sood, Charu and Gautam, Ankur and Raghava, G.P.S. (2018) TopicalPdb: A database of topically delivered peptides. PLOS ONE, 13 (2). e0190134. ISSN 1932-6203

H

Haleem, Nazia (2018) Understanding solution shape of Mycobacterium tuberculosis B-Lactamase(BlaC). PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

I

Iqbal, Iram and Bajeli, Sapna and Akela, Ajit and Kumar, Ashwani (2018) Bioenergetics of Mycobacterium: An Emerging Landscape for Drug Discovery. Pathogens, 7 (1). p. 24. ISSN 2076-0817

J

Jain, Rishu and Agarwal, Mukesh Chand and Kumar, Rakesh and Sharma, Deepak and Kumar, Rajesh (2018) Effects of lyotropic anions on thermodynamic stability and dynamics of horse cytochrome c. Biophysical chemistry, 240. pp. 88-97. ISSN 1873-4200

Jangra, Manoj and Randhawa, Harmandeep Kaur and Kaur, Manpreet and Srivastava, Anugya and Maurya, Navdezda and Patil, Prashant P and Jaswal, Pallavi and Arora, Ashish and Patil, Prabhu B and Raje, Manoj and Nandanwar, Hemraj (2018) Purification, Characterization and Evaluation of Polymyxin A From : An Underexplored Member of the Polymyxin Family. Frontiers in microbiology, 9. p. 2864. ISSN 1664-302X

K

Kalra, Rashi and Bhagyaraj, Ella and Tiwari, Drishti and Nanduri, Ravikanth and Chacko, Anuja P and Jain, Monika and Mahajan, Sahil and Khatri, Neeraj and Gupta, Pawan (2018) AIRE promotes androgen-independent prostate cancer by directly regulating IL-6 and modulating tumor microenvironment. Oncogenesis, 7 (5). pp. 1-15. ISSN 2157-9024

Kaur, Amanpreet (2018) Studies on the interaction of Eis (Enhanced Intracellular Survival) protein of Mycobacterium tuberculosis with macrophage protein,DHFRL 1:Characterization of interaction and elucidation of its biological significance. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kaur, Gundeep and Kapoor, Srajan and Thakur, Krishan Gopal (2018) HelD, an RNA Polymerase Interacting Helicase, Forms Amyloid-Like Fibrils. Frontiers in microbiology, 9. p. 1934. ISSN 1664-302X

Kaur, Gundeep and Kaundal, Soni and Kapoor, Srajan and Grimes, Jonathan M and Huiskonen, Juha T and Thakur, Krishan Gopal(2018) Mycobacterium tuberculosis CarD, an essential global transcriptional regulator forms amyloid-like fibrils. Scientific reports, 8 (1). p. 10124. ISSN 2045-2322

Kaur, Gurmeet and Iyer, Lakshminarayan M and Subramanian, Srikrishna and Aravind, L (2018) Evolutionary convergence and divergence in archaeal chromosomal proteins and Chromo-like domains from bacteria and eukaryotes. Scientific reports, 8 (1). p. 6196. ISSN 2045-2322

Kaur, Gurmeet and Subramanian, Srikrishna (2018) Evolutionary relationship between the cysteine and histidine rich domains (CHORDs) and Btk-type zinc fingers. Bioinformatics. ISSN 1367-4803

Kaur, Karambir (2018) Development of computational resources and analysis for CRISR/Cas based genome editing. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kaur, Manpreet and Singh, Harjodh and Sharma, Shivani and Mishra, Sunita and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Sphingobacterium bovisgrunnientis sp. nov., isolated from yak milk. International Journal of Systematic and Evolutionary Microbiology, 68 (2). pp. 636-642. ISSN 1466-5026

Kaur, Navjot and Seuylemezian, Arman and Patil, Prashant P and Patil, Prabhu and Krishnamurti, Srinivasan and Varelas, Josephand Smith, David J and Mayilraj, Shanmugam and Vaishampayan, Parag (2018) Paenibacillus xerothermodurans sp. nov., an extremely dry heat resistant spore forming bacterium isolated from the soil of Cape Canaveral, Florida. International journal of systematic and evolutionary microbiology, 68 (10). pp. 3190-3196. ISSN 1466-5034

Khairnar, Aasawari (2018) Studies on Bacterial Nonulosonic Acid Transferases and F-type Lectins. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kiran, Shashi and Schumann, Peter and Busse, Hans-Jürgen and Spröer, Cathrin and Rana, Aditi and Pal, Mohinder and Korpole, Suresh and Tewari, Rupinder and Gulati, Arvind (2018) Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake.International journal of systematic and evolutionary microbiology, 68 (11). pp. 3416-3423. ISSN 1466-5034

Krishnan, Ramya and Lang, Elke and Midha, Samriti and Patil, Prabhu B and Rameshkumar, N (2018) Isolation and characterization of a novel 1-aminocyclopropane-1-carboxylate (ACC) deaminase producing plant growth promoting marine Gammaproteobacteria from crops grown in brackish environments. Proposal for Pokkaliibacter plantistimulans gen. nov., sp. nov., Balneatrichaceae fam. nov. in the order Oceanospirillales and an emended description of the genus Balneatrix. Systematic and applied microbiology, 41 (6). pp. 570-580. ISSN 1618-0984

Kumar, A and Karthikeyan, Subramanian (2018) Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis. Acta Crystallographica Section F Structural Biology Communications, 74 (3). pp. 166-173. ISSN 2053-230X

Kumar, Gaurav and Arya, Subhash B and Tuli, Amit (2018) Method for Studying the Effect of Gene Silencing on Bacterial Infection-induced ERK1/2 Signaling in Bone-marrow Derived Macrophages. Bio-protocol, 8 (24). ISSN 2331-8325

Kumar, Manoj and Rajput, Akanksha (2018) Phylogenomics and Evolutionary Perspective of Quorum Sensing Regulators (LuxI/LuxR) in Prokaryotes. In: Quorum Sensing and its Biotechnological Applications. Springer, Singapore, pp. 61-70.

Kumar, Rajesh and Kumar, Rajesh and Sharma, Deepak and Garg, Mansi and Kumar, Vinay and Agarwal, Mukesh Chand (2018)Macromolecular crowding-induced molten globule states of the alkali pH-denatured proteins. Biochimica et biophysica acta. Proteins and proteomics, 1866 (11). pp. 1102-1114. ISSN 1878-1454

Kumar, Rajesh and Sharma, Deepak and Kumar, Vinay and Kumar, Rajesh (2018) Factors defining the effects of macromolecular crowding on dynamics and thermodynamic stability of heme proteins in-vitro. Archives of biochemistry and biophysics, 654. pp. 146-162. ISSN 1096-0384

Kumar, Shekhar and Singh, Harjodh and Kaur, Manpreet and Kaur, Lakhwinder and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Bacillus shivajii sp. nov., isolated from a water sample of Sambhar salt lake, India. International journal of systematic and evolutionary microbiology, 68 (11). pp. 3463-3470. ISSN 1466-5034

Kumar, Vineet (2018) Unraveling the cross talk of metal homeostasis networks and its impact on transcription and translation machinery in Escherichia coli. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kumar, Vinod and Agrawal, Piyush and Kumar, Rajesh and Bhalla, Sherry and Usmani, Salman Sadullah and Varshney, Grish C and Raghava, Gajendra P S (2018) Prediction of Cell-Penetrating Potential of Modified Peptides Containing Natural and Chemically Modified Residues. Frontiers in microbiology, 9. p. 725. ISSN 1664-302X

L

Loharch, Saurabh (2018) Targeting Sirtuins: Computational Medchem,Biochemical and Structural Biology Approach. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Lokesh, Dhanashree and Parkesh, Raman and Kammara, Rajagopal (2018) Bifidobacterium adolescentis is intrinsically resistant to antitubercular drugs. Scientific reports, 8 (1). p. 11897. ISSN 2045-2322

M

Mahajan, Sonal and Ramya, T N C (2018) F-type Lectin Domains: Provenance, Prevalence, Properties, Peculiarities, and Potential.Advances in experimental medicine and biology, 1112. pp. 345-363. ISSN 0065-2598

Mahajan, Sonal and Ramya, T N C (2018) Nature-inspired engineering of an F-type lectin for increased binding strength.Glycobiology, 28 (12). pp. 933-948. ISSN 1460-2423

Maheshwari, Anand (2018) In Vitro and In Vivo studies of third generation clot busters. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Mahor, Durga and Prasad, Gandham S (2018) Biochemical Characterization of Adenine Deaminase and Guanine Deaminase and Their Potential Application in Lowering Purine Content in Beer. Frontiers in bioengineering and biotechnology, 6. p. 180. ISSN 2296-4185

Mathur, Deepika and Singh, Sandeep and Mehta, Ayesha and Agrawal, Piyush and Raghava, G.P.S. (2018) In silico approaches for predicting the half-life of natural and modified peptides in blood. PloS one, 13 (6). e0196829. ISSN 1932-6203

Maurya, Sudeep K (2018) Boosting the efficacy of Bacillus Calmette-Guerin (BCG) for protection against Mycobacterium tuberculosis.PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Michelet, Xavier and Tuli, Amit and Gan, Huixian and Geadas, Carolina and Sharma, Mahak and Remold, Heinz G and Brenner, Michael B (2018) Lysosome-Mediated Plasma Membrane Repair Is Dependent on the Small GTPase Arl8b and Determines Cell Death Type in Infection. Journal of immunology (Baltimore, Md. : 1950), 200 (9). pp. 3160-3169. ISSN 1550-6606

Muddassir, Mohd and Manna, Bharat and Singh, Priyanka and Singh, Surjeet and Kumar, Rajesh and Ghosh, Amit and Sharma, Deepak (2018) Single-molecule force-unfolding of titin I27 reveals a correlation between the size of the surrounding anions and its mechanical stability. Chemical communications (Cambridge, England), 54 (69). pp. 9635-9638. ISSN 1364-548X

Muthu Krishnan, S. (2018) Using Chou's general PseAAC to analyze the evolutionary relationship of receptor associated proteins (RAP) with various folding patterns of protein domains. Journal of Theoretical Biology, 445. pp. 62-74. ISSN 00225193

N

Nadeem, Sajid (2018) Influence of Gut Microbiota on the efficacy of vaccines against Mycobacterium tuberculosis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Nag, Dhrubajyoti and Breen, Paul and Raychaudhuri, Saumya and Withey, Jeffrey H (2018) Glucose metabolism by inhibits intestinal colonization of zebrafish. Infection and immunity. ISSN 1098-5522

Nagar, Jyoti (2018) Understanding shape profiles of Urea induced unfolded states of multidomain protein gelsolin. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Nagpal, Gandharva and Chaudhary, Kumardeep and Agrawal, Piyush and Raghava, G.P.S. (2018) Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants. Journal of translational medicine, 16 (1). p. 181. ISSN 1479-5876

Navdezda, . (2018) ESBL study in Drug-Resistant Gram Negative Bacteria and Isolation of Bioactive Molecules from Microbial Source to Combat Multi-Drug Resistance. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Negi, Shikha (2018) Crosstalk between Gut Microbiota and Host Immune System in Tuberculosis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

P

Pahari, Susanta and Kaur, Gurpreet and Negi, Shikha and Aqdas, Mohammad and Das, Deepjyoti K. and Bashir, Hilal and Singh, Sanpreet and Nagare, Mukta and Khan, Junaid and Agrewala, J N (2018) Reinforcing the Functionality of Mononuclear Phagocyte System to Control Tuberculosis. Frontiers in Immunology, 9. ISSN 1664-3224

Pal, Deepika and Bhardwaj, Ayanka and Kaur, Navjot and Sudan, Sarabjeet Kour and Bisht, Bhawana and Kumari, Munesh and Vyas, Bhawna and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2018) Fictibacillus aquaticus sp. nov., isolated from downstream river water. International Journal of Systematic and Evolutionary Microbiology, 68 (1). pp. 160-164. ISSN 1466-5026

Pal, Deepika and Bhardwaj, Ayanka and Sudan, Sarabjeet Kour and Kaur, Navjot and Kumari, Munesh and Bisht, Bhawana and Vyas, Bhawna and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2018) Thauera propionica sp. nov., isolated from downstream sediment sample of the river Ganges, Kanpur, India. International Journal of Systematic and Evolutionary Microbiology, 68 (1). pp. 341-346. ISSN 1466-5026

Pal, Deepika and Kaur, Navjot and Sudan, Sarabjeet Kour and Bisht, Bhawana and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2018) Acidovorax kalamii sp. nov., isolated from a water sample of the river Ganges. International journal of systematic and evolutionary microbiology, 68 (5). pp. 1719-1724. ISSN 1466-5034

Passi, Anurag (2018) Drug Repurposing for Tuberculosis using Network Pharmacology and Pharmacogenomics. PhD thesis, ACSIR-IMTECH, Chandigarh.

Passi, Anurag and Rajput, Neeraj Kumar and Wild, David J and Bhardwaj, Anshu (2018) RepTB: a gene ontology based drug repurposing approach for tuberculosis. Journal of cheminformatics, 10 (1). p. 24. ISSN 1758-2946

Pathania, Preeti Kumari and Saini, Jai Kumar and Vij, Shania and Tewari, Rupinder and Sabherwal, Priyanka and Rishi, Praveen and Suri, C Raman (2018) Aptamer functionalized MoS-rGO nanocomposite based biosensor for the detection of Vi antigen. Biosensors & bioelectronics, 122. pp. 121-126. ISSN 1873-4235

Patil, Prashant P and Kumar, Sanjeet and Midha, Samriti and Gautam, Vikas and Patil, Prabhu B (2018) Taxonogenomics reveal multiple novel genomospecies associated with clinical isolates of Stenotrophomonas maltophilia. Microbial genomics, 4 (8). ISSN 2057-5858

Q

Qureshi, Abid and Rajput, Akanksha and Kaur, Gazaldeep and Kumar, Manoj (2018) HIVprotI: an integrated web based platform for prediction and design of HIV proteins inhibitors. Journal of Cheminformatics, 10 (1). ISSN 1758-2946

R

Rai, Pradeep K and Chodisetti, Sathi Babu and Maurya, Sudeep K and Nadeem, Sajid and Zeng, Weiguang and Janmeja, Ashok Kand Jackson, David C and Agrewala, J N (2018) A lipidated bi-epitope vaccine comprising of MHC-I and MHC-II binder peptides elicits protective CD4 T cell and CD8 T cell immunity against Mycobacterium tuberculosis. Journal of translational medicine, 16 (1). p. 279. ISSN 1479-5876

Rajput, Akanksha and Kumar, Manoj (2018) Anti-biofilm Peptides: A New Class of Quorum Quenchers and Their Prospective Therapeutic Applications. In: Biotechnological Applications of Quorum Sensing Inhibitors. Springer, Singapore, pp. 87-110.

Rajput, Akanksha and Kumar, Manoj (2018) Anti-flavi: A Web Platform to Predict Inhibitors of Using QSAR and Peptidomimetic Approaches. Frontiers in microbiology, 9. p. 3121. ISSN 1664-302X

Rajput, Akanksha and Thakur, Anamika and Sharma, Shivangi and Kumar, Manoj (2018) aBiofilm: a resource of anti-biofilm agents and their potential implications in targeting antibiotic drug resistance. Nucleic Acids Research, 46 (D1). D894-D900. ISSN 0305-1048

S

Saini, Ankita and Mahajan, Sahil and Ahuja, Nancy and Bhagyaraj, Ella and Kalra, Rashi and Janmeja, Ashok Kumar and Gupta, Pawan (2018) An Accord of Nuclear Receptor Expression in M. tuberculosis Infected Macrophages and Dendritic Cells. Scientific Reports, 8 (1). ISSN 2045-2322

Sajid, Mohammad and Agrewala, J N (2018) Low prevalence of anti-xenobiotic antibodies among the occupationally exposed individuals is associated with a high risk of cancer. Cancer medicine, 8 (1). pp. 246-260. ISSN 2045-7634

Sharma, G. and Khatri, Indu and Subramanian, Srikrishna (2018) Comparative Genomics of Myxobacterial Chemosensory Systems.Journal of bacteriology, 200 (3). ISSN 1098-5530

Sharma, S and Ramya, T N C (2018) Saccharide binding by intelectins. International journal of biological macromolecules, 108. pp. 1010-1016. ISSN 1879-0003

Sharma, Shikha (2018) Phylogenomics Based Comparative studies on Host Adaptive bacteria. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Sharma, Shikha and Chaudhry, Vasvi and Kumar, Sanjeet and Patil, Prabhu B (2018) Phylogenomic Based Comparative Studies on Indian and American CommensalIsolates. Frontiers in microbiology, 9. p. 333. ISSN 1664-302X

Shikha, Sristy (2018) Studies on Biomolecules Immobilized to Nanoparticles for Bio-Applications. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Showkat, Ahmad and Kumar, Manoj (2018) saRNAdb: Resource of Small Activating RNAs for Up-regulating the Gene Expression.Journal of molecular biology, 430 (15). pp. 2212-2218. ISSN 1089-8638

Singh, Bharat Bhushan (2018) Studies on the functions of GacA/GacS two component system in antimicrobial resistance in Acinetobacter baumannii. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Singh, Harjodh and Kaur, Manpreet and Kaur, Lakhwinder and Sharma, Shivani and Mishra, Sunita and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Bacillus lacus sp. nov., isolated from a water sample of a salt lake in India. International Journal of Systematic and Evolutionary Microbiology, 68 (3). pp. 801-809. ISSN 1466-5026

Singh, Harjodh and Kaur, Manpreet and Sharma, Shivani and Kaur, Lakhwinder and Mishra, Sunita and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Bacillus alkalilacus sp. nov., isolated from a sediment sample from a lake in India.International journal of systematic and evolutionary microbiology, 68 (5). pp. 1665-1671. ISSN 1466-5034

Singh, Nisha and Ahmad, Zeeshan and Baid, Navin and Kumar, Ashwani (2018) Host heme oxygenase-1: Friend or foe in tackling pathogens? IUBMB life, 70 (9). pp. 869-880. ISSN 1521-6551

Singh, Nisha and Kansal, Pallavi and Ahmad, Zeeshan and Baid, Navin and Kushwaha, Hariom and Khatri, Neeraj and Kumar, Ashwani (2018) Antimycobacterial effect of IFNG (interferon gamma)-induced autophagy depends on HMOX1 (heme oxygenase 1)-mediated increase in intracellular calcium levels and modulation of PPP3/calcineurin-TFEB (transcription factor EB) axis. Autophagy, 14 (6). pp. 972-991. ISSN 1554-8635

Singh, Pargat and Gupta, Ritika and Choudhury, Megha and Pinnaka, Anil Kumar and Kumar, Rajesh and Bhalla, Vijayender (2018)Drug and nanoparticle-mediated rapid naked eye water test for pathogens detection. Sensors and Actuators B: Chemical, 262 (1). pp. 603-610.

Singh, Suruchi and Sevalkar, Ritesh Rajesh and Sarkar, Dibyendu and Karthikeyan, Subramanian (2018) Characteristics of the essential pathogenicity factor Rv1828, a MerR family transcription regulator from Mycobacterium tuberculosis. The FEBS journal, 285 (23). pp. 4424-4444. ISSN 1742-4658

Solanki, Vipul and Kapoor, Srajan and Thakur, Krishan Gopal (2018) Structural insights into the mechanism of Type IVa pilus extension and retraction ATPase motors. The FEBS journal, 285 (18). pp. 3402-3421. ISSN 1742-4658

Solanki, Vipul Ambalal (2018) To understand the molecular basis for extracellular electron transfer in Geobacter species. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Srinivasan, Vijaya Bharathi and Angrasan, Mahavinod and Chandel, Neha and Rajamohan, Govindan (2018) Genome sequence and comparative analysis of Bacillus cereus BC04, reveals genetic diversity and alterations for antimicrobial resistance. Functional & integrative genomics, 18 (4). pp. 477-487. ISSN 1438-7948

Srinivasan, Vijaya Bharathi and Rajamohan, Govindan (2018) Genome analysis of urease positive Serratia marcescens, co-producing SRT-2 and AAC(6')-Ic with multidrug efflux pumps for antimicrobial resistance. Genomics. ISSN 1089-8646 (In Press)

Srivastava, Ankit and Singh, Jasdeep and Singh Yadav, Shiv Pratap and Arya, Prabha and Kalim, Fouzia and Rose, Pooja and Ashish, . and Kundu, Bishwajit (2018) The Gelsolin Pathogenic D187N Mutant Exhibits Altered Conformational Stability and Forms Amyloidogenic Oligomers. Biochemistry, 57 (16). pp. 2359-2372. ISSN 1520-4995

Srivastava, Ritika and Kaur, Amanpreet and Sharma, Charu and Karthikeyan, Subramanian (2018) Structural characterization of ribT from Bacillus subtilis reveals it as a GCN5-related N-acetyltransferase. Journal of Structural Biology, 202 (1). pp. 70-81. ISSN 10478477

Sudan, Sarabjeet Kour (2018) Bioprospecting of industrially important enzymes from complex microbial communities by cultivation-dependent and-independent approaches. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Sudan, Sarabjeet Kour and Kumar, Narender and Kaur, Ishwinder and Sahni, Girish (2018) Production, purification and characterization of raw starch hydrolyzing thermostable acidic α-amylase from hot springs, India. International journal of biological macromolecules, 117. pp. 831-839. ISSN 1879-0003

Sudan, Sarabjeet Kour and Pal, Deepika and Bisht, Bhawana and Kumar, Narender and Chaudhry, Vasvi and Patil, Prabhu and Sahni, Girish and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2018) Pseudomonas fluvialis sp. nov., a novel member of the genus Pseudomonas isolated from the river Ganges, India. International Journal of Systematic and Evolutionary Microbiology, 68 (1). pp. 402-408. ISSN 1466-5026

T

Thakur, Naveen and Kumar, Ashwani and Dikshit, Kanak L (2018) Type II flavohemoglobin of Mycobacterium smegmatis oxidizes d-lactate and mediate electron transfer. International journal of biological macromolecules, 112. pp. 868-875. ISSN 1879-0003

Tomar, Rajul (2018) Studies on Novel Uricases of the Yeast Kluyveromyces Lactis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Tuli, Amit and Sharma, Mahak (2018) How to do business with lysosomes: Salmonella leads the way. Current opinion in microbiology, 47. pp. 1-7. ISSN 1879-0364

U

Usmani, Salman Sadullah and Bhalla, Sherry and Raghava, G.P.S. (2018) Prediction of Antitubercular Peptides From Sequence Information Using Ensemble Classifier and Hybrid Features. Frontiers in pharmacology, 9. p. 954. ISSN 1663-9812

Usmani, Salman Sadullah and Kumar, Rajesh and Bhalla, Sherry and Kumar, Vinod and Raghava, G.P.S. (2018) In Silico Tools and Databases for Designing Peptide-Based Vaccine and Drugs. Advances in protein chemistry and structural biology, 112. pp. 221-263. ISSN 1876-1631

Usmani, Salman Sadullah and Kumar, Rajesh and Kumar, Vinod and Singh, Sandeep and Raghava, G.P.S. (2018) AntiTbPdb: a knowledgebase of anti-tubercular peptides. Database : the journal of biological databases and curation, 2018. ISSN 1758-0463

V

Vaid, Bhavna (2018) Synthesis and Evaluation of 2,2'-Bipyridine Derivatives for Therapeutic Applications. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Vasanth, Vaidyanathan (2018) Studies on the role of two component system in mediating antimicrobial resistance in Acinetobacter Baumannii. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Verma, Ashish (2018) Study of Prokaryotic Diversity from Marine Habitats of the Central west Coast of India. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Vidyarthi, Aurobind and Khan, Nargis and Agnihotri, Tapan and Negi, Shikha and Das, Deepjyoti K and Aqdas, Mohammad and Chatterjee, Deepyan and Colegio, Oscar R and Tewari, Manoj K and Agrewala, J N (2018) TLR-3 Stimulation Skews M2 Macrophages to M1 Through IFN-αβ Signaling and Restricts Tumor Progression. Frontiers in immunology, 9. p. 1650. ISSN 1664-3224

Y

Yadav, Punam and Maharjan, Jyoti and Korpole, Suresh and Prasad, Gandham S and Sahni, Girish and Bhattarai, Tribikram and Sreerama, Lakshmaiah (2018) Production, Purification, and Characterization of Thermostable Alkaline Xylanase From NASTPD13.Frontiers in bioengineering and biotechnology, 6. p. 65. ISSN 2296-4185

Yadav, Shiv Pratap Singh (2018) Understanding shape and functional aspects of aptamers capable of binding recombinant human gelsolin and its variants. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

A

Ahmed, Niyaz and Pahil, Sapna and Taneja, Neelam and Ansari, Hifzur Rahman and Raghava, G.P.S. (2017) In silico analysis to identify vaccine candidates common to multiple serotypes of Shigella and evaluation of their immunogenicity. PLOS ONE, 12 (8). e0180505. ISSN 1932-6203

Alfatah, Md. and Bari, Vinay K. and Nahar, Anubhav S. and Bijlani, Swati and Ganesan, K. (2017) Critical role for CaFEN1 and CaFEN12 of Candida albicans in cell wall integrity and biofilm formation. Scientific Reports, 7. ISSN 2045-2322

Amir, Mohammed and Aqdas, Mohammad and Nadeem, Sajid and Siddiqui, Kaneez F. and Khan, Nargis and Sheikh, Javaid A. and Agrewala, J N (2017) Diametric Role of the Latency-Associated Protein Acr1 of Mycobacterium tuberculosis in Modulating the Functionality of Pre- and Post-maturational Stages of Dendritic Cells. Frontiers in Immunology, 8. ISSN 1664-3224

B

Badmalia, Maulik D. and Singh, Shikha and Garg, Renu and Ashish, . (2017) Visualizing Temperature Mediated Activation of Gelsolin and Its Deactivation By Pip2: A Saxs Based Study. Scientific Reports, 7 (1). ISSN 2045-2322

Baindara, Piyush and Gautam, Ankur and Raghava, G.P.S. and Korpole, Suresh (2017) Anticancer properties of a defensin like class IId bacteriocin Laterosporulin10. Scientific Reports, 7. p. 46541. ISSN 2045-2322

Baindara, Piyush and Kapoor, Anoop and Korpole, Suresh and Grover, Vishakha (2017) Cysteine-rich low molecular weight antimicrobial peptides from Brevibacillus and related genera for biotechnological applications. World Journal of Microbiology and Biotechnology, 33 (6). ISSN 0959-3993

Bankapalli, Leela Krishna and Mishra, Rahul C. and Raychaudhuri, Saumya (2017) VopE, a Vibrio cholerae Type III Effector, Attenuates the Activation of CWI-MAPK Pathway in Yeast Model System. Frontiers in Cellular and Infection Microbiology, 7. ISSN 2235-2988

Bansal, Kanika and Midha, Samriti and Kumar, Sanjeet and Patil, Prabhu B. and Elliot, Marie A. (2017) Ecological and Evolutionary Insights into Xanthomonas citri Pathovar Diversity. Applied and Environmental Microbiology, 83 (9). e02993-16. ISSN 0099-2240

Bansal, Roohi and Anil Kumar, Vijjamarri and Sevalkar, Ritesh Rajesh and Singh, Prabhat Ranjan and Sarkar, Dibyendu (2017)Mycobacterium tuberculosis virulence-regulator PhoP interacts with alternative sigma factor SigE during acid-stress response.Molecular Microbiology, 104 (3). pp. 400-411. ISSN 0950382X

Bhalla, Sherry and Chaudhary, Kumardeep and Kumar, Ritesh and Sehgal, Manika and Kaur, Harpreet and Sharma, Suresh and Raghava, G.P.S. (2017) Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer. Scientific Reports, 7. ISSN 2045-2322

Bhalla, Sherry and Verma, Ruchi and Kaur, Harpreet and Kumar, Rajesh and Usmani, Salman Sadullah and Sharma, Suresh and Raghava, G.P.S. (2017) CancerPDF: A repository of cancer-associated peptidome found in human biofluids. Scientific Reports, 7 (1). ISSN 2045-2322

Bhat, Aadil H. and Pathak, Deepika and Rao, Alka (2017) The alr-groEL1 operon in Mycobacterium tuberculosis: an interplay of multiple regulatory elements. Scientific Reports, 7. ISSN 2045-2322

Bijlani, Swati and Nahar, Anubhav S. and Ganesan, K. (2017) Improved Tet-On and Tet-Off systems for tetracycline-regulated expression of genes in Candida. Current Genetics, 64 (1). pp. 303-316. ISSN 0172-8083

C

Chander, Atul M. and Nair, Ramesan G. and Kaur, Gurwinder and Kochhar, Rakesh and Dhawan, Devinder K. and Bhadada, Sanjay K. and Mayilraj, Shanmugam (2017) Genome Insight and Comparative Pathogenomic Analysis of Nesterenkonia jeotgali Strain CD08_7 Isolated from Duodenal Mucosa of Celiac Disease Patient. Frontiers in Microbiology, 8. ISSN 1664-302X

Chander, Atul Munish and Kumari, Munesh and Kochhar, Rakesh and Dhawan, Devinder Kumar and Bhadada, Sanjay Kumar and Mayilraj, Shanmugam (2017) Genome Sequence of Kocuria polaris Strain CD08_4, an Isolate from the Duodenal Mucosa of a Celiac Disease Patient. Genome Announcements, 5 (43). e01158-17. ISSN 2169-8287

Chaudhry, Vasvi and Sharma, Shikha and Bansal, Kanika and Patil, Prabhu B. (2017) Glimpse into the Genomes of Rice Endophytic Bacteria: Diversity and Distribution of Firmicutes. Frontiers in Microbiology, 7. ISSN 1664-302X

Chauhan, Anoop Singh and Kumar, Manoj and Chaudhary, Surbhi and Patidar, Anil and Dhiman, Asmita and Sheokand, Navdeepand Malhotra, Himanshu and Raje, Chaaya Iyengar and Raje, Manoj (2017) Moonlighting glycolytic protein glyceraldehyde-3-phosphate dehydrogenase (GAPDH): an evolutionarily conserved plasminogen receptor on mammalian cells. The FASEB Journal, 31 (6). pp. 2638-2648. ISSN 0892-6638

D

Deep, Amar and Kaundal, Soni and Agarwal, Sakshi and Singh, Ramandeep and Thakur, Krishan Gopal (2017) Crystal structure of Mycobacterium tuberculosis VapC20 toxin and its interactions with cognate antitoxin, VapB20, suggest a model for toxin-antitoxin assembly. The FEBS Journal, 284 (23). pp. 4066-4082. ISSN 1742464X

G

Ghosh, Suparna and Dureja, Chetna and Khatri, Indu and Subramanian,Srikrishna and Raychaudhuri, Saumya and Ghosh, Sagarmoy (2017) Identification of novel small RNAs in Burkholderia cenocepacia KC-01 expressed under iron limitation and oxidative stress conditions. Microbiology, 163 (12). pp. 1924-1936. ISSN 1350-0872

Gupta, Garima and Agarwal, Uday and Kaur, Harneet and Kumar, Neelima R and Gupta, Pawan (2017) Aphicidal effects of terpenoids present in Citrus limon on Macrosiphum roseiformis and two generalist insect predators. Journal of Asia-Pacific Entomology, 20 (4). pp. 1087-1095.

Gupta, Vasundhera and Singh, Pradip Kumar and Korpole, Suresh and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar(2017) Bacillus mangrovi sp. nov., isolated from a sediment sample from a mangrove forest. International Journal of Systematic and Evolutionary Microbiology, 67 (7). pp. 2219-2224. ISSN 1466-5026

H

Hade, Mangesh Dattu and Kaur, Jagdeep and Chakraborti, Pradip K. and Dikshit, Kanak L. (2017) Multidomain truncated hemoglobins: New members of the globin family exhibiting tandem repeats of globin units and domain fusion. IUBMB Life, 69 (7). pp. 479-488. ISSN 15216543

K

Kachhap, Sangita and Priyadarshini, Pragya and Singh, Balvinder (2017) Molecular dynamics simulations show altered secondary structure of clawless in binary complex with DNA providing insights into aristaless-clawless-DNA ternary complex formation. Journal of Biomolecular Structure and Dynamics, 35 (6). pp. 1153-1167. ISSN 0739-1102

Kaur, G. and Subramanian, Srikrishna (2017) Evolutionary analysis of a novel zinc ribbon in the N-terminal region of threonine synthase. Cell Cycle, 16 (20). pp. 1918-1926. ISSN 1538-4101

Kaur, Gursharan and Kumar, Vineet and Arora, Amit and Tomar, Ajay and Ashish, . and Sur, Runa and Dutta, Dipak (2017) Affected energy metabolism under manganese stress governs cellular toxicity. Scientific Reports, 7. ISSN 2045-2322

Kaur, Manpreet and Singh, Harjodh and Jangra, Manoj and Kaur, Lakhwinder and Jaswal, Pallavi and Dureja, Chetna and Nandanwar, Hemraj and Chaudhuri, Saumya Ray and Raje, Manoj and Mishra, Sunita and Pinnaka, Anil Kumar (2017) Lactic acid bacteria isolated from yak milk show probiotic potential. Applied Microbiology and Biotechnology, 101 (20). pp. 7635-7652. ISSN 0175-7598

Kaushik, Abhishek and Ekka, Mary Krishna and Kumaran, Sangaralingam (2017) Two Distinct Assembly States of the Cysteine Regulatory Complex of Salmonella typhimurium Are Regulated by Enzyme–Substrate Cognate Pairs. Biochemistry, 56 (18). pp. 2385-2399. ISSN 0006-2960

Khatri, Indu and Tomar, Rajul and Ganesan, K. and Prasad, G. S. and Subramanian, Srikrishna (2017) Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii. Scientific Reports, 7. ISSN 2045-2322

Kiran, Shashi and Swarnkar, Mohit Kumar and Mayilraj, Shanmugam and Tewari, Rupinder and Gulati, Arvind (2017) Paenibacillus ihbetae sp. nov., a cold-adapted antimicrobial producing bacterium isolated from high altitude Suraj Tal Lake in the Indian trans-Himalayas. Systematic and Applied Microbiology, 40 (7). pp. 430-439. ISSN 07232020

Krishnan, Ramya and Menon, Rahul R. and Likhitha, . and Busse, Hans-Jürgen and Tanaka, Naoto and Krishnamurthi, Srinivasanand Rameshkumar, N. (2017) Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice. Research in Microbiology, 168 (2). pp. 113-121. ISSN 09232508

Kujur, Weshely and Gurram, Rama Krishna and Maurya, Sudeep K. and Nadeem, Sajid and Chodisetti, Sathi Babu and Khan, Nargisand Agrewala, J N (2017) Caerulomycin A suppresses the differentiation of naïve T cells and alleviates the symptoms of experimental autoimmune encephalomyelitis. Autoimmunity, 50 (5). pp. 317-328. ISSN 0891-6934

Kumar, R. and Pinnaka, Anil Kumar and Krishnan, Beena (2017) TfoI produced by Tepidimonas fonticaldi PL17, a moderate thermophilic bacterium, is an isoschizomer of MseI. Extremophiles, 21 (3). pp. 523-535. ISSN 1431-0651

Kumar, Shailesh and Sharma, Deepak and Kumar, Rajesh (2017) Role of Macromolecular Crowding on Stability and Iron Release Kinetics of Serum Transferrin. The Journal of Physical Chemistry B, 121 (37). pp. 8669-8683. ISSN 1520-6106

Kumar, Vineet and Mishra, Rajesh Kumar and Kaur, Gursharan and Dutta, Dipak (2017) Cobalt and nickel impair DNA metabolism by the oxidative stress independent pathway. Metallomics, 9 (11). pp. 1596-1609. ISSN 1756-5901

Kumar R, Manthan and Kaur, Navjot and Kumar, N and Kaur, G and Singh, N K and Krishnamurthi, S and Mayilraj, S. (2017) Bacillus maritimus sp. nov., a novel member of the genus Bacillus isolated from marine sediment. International Journal of Systematic and Evolutionary Microbiology, 67 (1). pp. 60-66. ISSN 1466-5026

M

Mahajan, Sonal and Khairnar, Aasawari and Bishnoi, Ritika and Ramya, T.N.C. (2017) Microbial F-type lectin domains with affinity for blood group antigens. Biochemical and Biophysical Research Communications, 491 (3). pp. 708-713. ISSN 0006291X

Malhotra, Himanshu and Patidar, Anil and Boradia, Vishant M. and Kumar, Rajender and Nimbalkar, Rakesh D. and Kumar, Ajay and Gani, Zahid and Kaur, Rajbeer and Garg, Prabha and Raje, Manoj and Raje, Chaaya I. (2017) Mycobacterium tuberculosis Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Functions as a Receptor for Human Lactoferrin. Frontiers in Cellular and Infection Microbiology, 7. ISSN 2235-2988

Malhotra, Neha and Karthikeyan, Subramanian and Chakraborti, Pradip K. (2017) Phosphorylation of mycobacterial phosphodiesterase by eukaryotic-type Ser/Thr kinase controls its two distinct and mutually exclusive functionalities. Journal of Biological Chemistry, 292 (42). pp. 17362-17374. ISSN 0021-9258

Marwaha, Rituraj and Arya, Subhash B. and Jagga, Divya and Kaur, Harmeet and Tuli, Amit and Sharma, Mahak (2017) The Rab7 effector PLEKHM1 binds Arl8b to promote cargo traffic to lysosomes. The Journal of Cell Biology, 216 (4). pp. 1051-1070. ISSN 0021-9525

Midha, Samriti and Bansal, Kanika and Kumar, Sanjeet and Girija, Anil Madhusoodana and Mishra, Deo and Brahma, Kranthi and Laha, Gouri Sankar and Sundaram, Raman Meenakshi and Sonti, Ramesh V. and Patil, Prabhu B. (2017) Population genomic insights into variation and evolution of Xanthomonas oryzae pv. oryzae. Scientific Reports, 7. p. 40694. ISSN 2045-2322

Mittal, Monica and Singh, Appu Kumar and Kumaran, S. (2017) Structural and biochemical characterization of ligand recognition by CysB, the master regulator of sulfate metabolism. Biochimie, 142. pp. 112-124. ISSN 03009084

Monga, Isha and Qureshi, Abid and Thakur, Nishant and Gupta, Amit Kumar and Kumar, Manoj (2017) ASPsiRNA: A Resource of ASP-siRNAs Having Therapeutic Potential for Human Genetic Disorders and Algorithm for Prediction of Their Inhibitory Efficacy. G3 (Bethesda, Md.), 7 (9). pp. 2931-2943. ISSN 2160-1836

N

Nagar, R and Rao, Alka (2017) An iterative glycosyltransferase EntS catalyzes transfer and extension of O- and S-linked monosaccharide in enterocin 96. Glycobiology, 27 (8). pp. 766-776. ISSN 0959-6658

Nagpal, Gandharva and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Raghava, G.P.S. (2017) Computational Prediction of the Immunomodulatory Potential of RNA Sequences. Methods Molecular Biology, 1632. pp. 75-90. ISSN 1064-3745

Nagpal, Gandharva and Usmani, Salman Sadullah and Dhanda, Sandeep Kumar and Kaur, Harpreet and Singh, Sandeep and Sharma, Meenu and Raghava, G.P.S. (2017) Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential. Scientific Reports, 7. p. 42851. ISSN 2045-2322

Nupur, Nupur and Saini, Mohit Kumar and Singh, Pradeep Kumar and Korpole, Suresh and Srinivas Tanuku, Naga Radha and Takaichi, Shinichi and Pinnaka, Anil Kumar (2017) Imhoffiella gen. nov., a marine phototrophic member of the family Chromatiaceae including the description of Imhoffiella purpurea sp. nov. and the reclassification of Thiorhodococcus bheemlicus Anil Kumar et al. 2007 as Imhoffiella bheemlica comb. nov. International Journal of Systematic and Evolutionary Microbiology, 67 (6). pp. 1949-1956. ISSN 1466-5026

O

Ojha, Anup Kumar and Verma, Ashish and Pal, Yash and Bhatt, Deepak and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan(2017) Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga. International Journal of Systematic and Evolutionary Microbiology, 67 (8). pp. 2746-2751. ISSN 1466-5026

P

Pahari, Susanta and Chatterjee, Deepyan and Negi, Shikha and Kaur, Jagdeep and Singh, Balvinder and Agrewala, J N (2017)Morbid Sequences Suggest Molecular Mimicry between Microbial Peptides and Self-Antigens: A Possibility of Inciting Autoimmunity.Frontiers in Microbiology, 8. ISSN 1664-302X

Pahari, Susanta and Kaur, Gurpreet and Aqdas, Mohammad and Negi, Shikha and Chatterjee, Deepyan and Bashir, Hilal and Singh, Sanpreet and Agrewala, J N (2017) Bolstering Immunity through Pattern Recognition Receptors: A Unique Approach to Control Tuberculosis. Frontiers in Immunology, 8. ISSN 1664-3224

Pal, Deepika and Mathan Kumar, Rajendran and Kaur, Navjot and Kumar, Narender and Kaur, Gurwinder and Singh, Nitin Kumar and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2017) Bacillus maritimus sp. nov., a novel member of the genus Bacillus isolated from marine sediment. International journal of systematic and evolutionary microbiology, 67 (1). pp. 60-66. ISSN 1466-5034

Pathaniya, Preeti and Sharma, Anurima and Kumar, Binod and Rishi, Praveen and Suri, C Raman (2017) Selective identification of specific aptamers for the detection of non-typhoidal salmonellosis in an apta-impedimetric sensing format. Mcrichimica Acta, 184 (5). pp. 1499-1508.

Patil, Prashant P. and Mali, Swapna and Midha, Samriti and Gautam, Vikas and Dash, Lona and Kumar, Sunil and Shastri, Jayanthiand Singhal, Lipika and Patil, Prabhu B. (2017) Genomics Reveals a Unique Clone of Burkholderia cenocepacia Harboring an Actively Excising Novel Genomic Island. Frontiers in Microbiology, 8. ISSN 1664-302X

R

Rai, Pradeep K. and Chodisetti, Sathi Babu and Zeng, Weiguang and Nadeem, Sajid and Maurya, Sudeep K. and Pahari, Susantaand Janmeja, Ashok K. and Jackson, David C. and Agrewala, J N (2017) A lipidated peptide of Mycobacterium tuberculosis resuscitates the protective efficacy of BCG vaccine by evoking memory T cell immunity. Journal of Translational Medicine, 15 (1). ISSN 1479-5876

Rajput, Akanksha and Kumar, Manoj (2017) Computational Exploration of Putative LuxR Solos in Archaea and Their Functional Implications in Quorum Sensing. Frontiers in Microbiology, 8. ISSN 1664-302X

Rajput, Akanksha and Kumar, Manoj (2017) In silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria. Scientific Reports, 7 (1). ISSN 2045-2322

S

S. Yadav, Ghanshyam and K. Ravala, Sandeep and Kachhap, Sangita and Thakur, Meghna and Roy, Abhishek and Singh, Balvinderand Karthikeyan, Subramanian and K. Chakraborti, Pradip (2017) Eukaryotic-type serine/threonine kinase mediated phosphorylation at Thr 169 perturbs mycobacterial guanylate kinase activity. Bioscience Reports, 37 (6). BSR20171048. ISSN 0144-8463

Sagar, Amin and Arif, Ehtesham and Solanki, Ashish Kumar and Srivastava, Pankaj and Janech, Michael G. and Kim, Seok-Hyungand Lipschutz, Joshua H. and Kwon, Sang-Ho and Ashish, . and Nihalani, Deepak (2017) Targeting Neph1 and ZO-1 protein-protein interaction in podocytes prevents podocyte injury and preserves glomerular filtration function. Scientific Reports, 7. ISSN 2045-2322

Sagar, Amin and Haleem, Nazia and Bashir, Yaawar Mir and Ashish, . (2017) Search for non-lactam inhibitors of mtb β-lactamase led to its open shape in apo state: new concept for antibiotic design. Scientific Reports, 7 (1). ISSN 2045-2322

Sang, Qing-Xiang Amy and Usmani, Salman Sadullah and Bedi, Gursimran and Samuel, Jesse S. and Singh, Sandeep and Kalra, Sourav and Kumar, Pawan and Ahuja, Anjuman Arora and Sharma, Meenu and Gautam, Ankur and Raghava, G.P.S. (2017) THPdb: Database of FDA-approved peptide and protein therapeutics. PLOS ONE, 12 (7). e0181748. ISSN 1932-6203

Sengupta, Chirantana and Ekka, Manjula and Arora, Saurabh and Dhaware, Prashant D and Chowdhury, Rukhsana and Raychaudhuri, Saumya (2017) Cross feeding of glucose metabolism byproducts of human gut isolates and probiotic strains affect survival of Vibrio cholerae. Gut pathogens, 9. p. 3. ISSN 1757-4749

Sengupta, Chirantana and Ekka, Manjula and Arora, Saurabh and Dhaware, Prashant D. and Chowdhury, Rukhsana and Raychaudhuri, Saumya (2017) Cross feeding of glucose metabolism byproducts of Escherichia coli human gut isolates and probiotic strains affect survival of Vibrio cholerae. Gut Pathogens, 9 (3). ISSN 1757-4749

Sharma, G. and Subramanian, Srikrishna (2017) Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases. Genome Biology and Evolution, 9 (5). pp. 1304-1311. ISSN 1759-6653

Sharma, Gaurav and Khatri, Indu and Subramanian, Srikrishna (2017) Comparative Genomics of Myxobacterial Chemosensory Systems. Journal of Bacteriology, 200 (3). e00620-17. ISSN 0021-9193

Shinde, R N and Karthikeyan, Subramanian and Singh, Balvinder (2017) Molecular dynamics studies unravel role of conserved residues responsible for movement of ions into active site of DHBPS. Scientific Reports, 7. p. 40452. ISSN 2045-2322

Sidhu, Chandni and Thakur, Suresh and Sharma, Gunjan and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2017)Oceanospirillum sanctuarii sp. nov., isolated from a sediment sample. International Journal of Systematic and Evolutionary Microbiology, 67 (9). pp. 3428-3434. ISSN 1466-5026

Sidhu, Chandni and Vikram, Surendra and Pinnaka, Anil Kumar (2017) Unraveling the Microbial Interactions and Metabolic Potentials in Pre- and Post-treated Sludge from a Wastewater Treatment Plant Using Metagenomic Studies. Frontiers in Microbiology, 8. ISSN 1664-302X

Sindhwani, Aastha and Arya, Subhash B. and Kaur, Harmeet and Jagga, Divya and Tuli, Amit and Sharma, Mahak (2017) Salmonella exploits the host endolysosomal tethering factor HOPS complex to promote its intravacuolar replication. PLOS Pathogens, 13 (10). e1006700. ISSN 1553-7374

Singh, Appu Kumar and Ekka, Mary Krishna and Kaushik, Abhishek and Pandya, Vaibhav and Singh, Ravi P. and Banerjee, Shrijitaand Mittal, Monica and Singh, Vijay and Kumaran, S. (2017) Substrate-Induced Facilitated Dissociation of the Competitive Inhibitor from the Active Site of O-Acetyl Serine Sulfhydrylase Reveals a Competitive-Allostery Mechanism. Biochemistry, 56 (37). pp. 5011-5025. ISSN 0006-2960

Singh, Nisha and Vats, Asheema and Sharma, Aditi and Arora, Amit and Kumar, Ashwani (2017) The development of lower respiratory tract microbiome in mice. Microbiome, 5 (1). ISSN 2049-2618

Sinha, Kislay Kumar and Peddada, Nagesh and Jha, Pravin Kumar and Mishra, Anshul and Pandey, Krishna and Das, Vidya Nand Ravi and Ashish, . and Das, Pradeep (2017) Plasma Gelsolin Level in HIV-1-Infected Patients: An Indicator of Disease Severity. AIDS Research and Human Retroviruses, 33 (3). pp. 254-260. ISSN 0889-2229

Sristy, Shikha and Thakur, Krishan Gopal and Bhattacharyya, Mani Shankar (2017) Facile fabrication of lipase to amine functionalized gold nanoparticles to enhance stability and activity. RSC Advances, 7 (68). pp. 42845-42855. ISSN 2046-2069

T

Thakur, A and Qureshi, Abid and Kumar, Manoj (2017) vhfRNAi: a web-platform for analysis of host genes involved in viral infections discovered by genome wide RNAi screens. Molecular BioSystems, 13 (7). pp. 1377-1387. ISSN 1742-206X

U

Upadhyay, Udita and Srivastava, Suchita and Khatri, Indu and Nanda, Jagpreet Singh and Subramanian, Srikrishna and Arora, Amitand Singh, Jagmohan (2017) Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB. Molecular Biology of the Cell, 28 (8). pp. 1132-1146. ISSN 1059-1524

V

Verma, Ashish and Ojha, Anup Kumar and Dastager, Syed G. and Natarajan, Rameshkumar and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2017) Domibacillus mangrovi sp. nov. and Domibacillus epiphyticus sp. nov., isolated from marine habitats of the central west coast of India. International Journal of Systematic and Evolutionary Microbiology, 67 (8). pp. 3063-3070. ISSN 1466-5026

Verma, Ashish and Ojha, Anup Kumar and Pal, Yash and Kumari, Parveen and Schumann, Peter and Gruber-Vodicka, Harald and Dastager, Syed G. and Natarajan, Ramesh Kumar and Mayilraj, S. and Krishnamurthi, Srinivasan (2017) An investigation into the taxonomy of “ Bacillus aminovorans ” and its reclassification to the genus Domibacillus as Domibacillus aminovorans sp. nov.Systematic and Applied Microbiology, 40 (7). pp. 458-467. ISSN 07232020

Verma, Ashish and Pal, Yash and Khatri, Indu and Ojha, Anup Kumar and Gruber-Vodicka, Harald and Schumann, Peter and Dastager, Syed and Subramanian, Srikrishna and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2017) Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius. Systematic and Applied Microbiology, 40 (7). pp. 411-422. ISSN 07232020

W

Wilkinson, Katalin Andrea and Vidyarthi, Aurobind and Khan, Nargis and Agnihotri, Tapan and Siddiqui, Kaneez F. and Nair, Girish R.and Arora, Ashish and Janmeja, Ashok K. and Agrewala, Javed N. (2017) Antibody response against PhoP efficiently discriminates among healthy individuals, tuberculosis patients and their contacts. PLOS ONE, 12 (3). e0173769. ISSN 1932-6203

A

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) Evolutionary relationships between heme-binding ferredoxin α + β barrels. BMC bioinformatics, 17. p. 168. ISSN 1471-2105

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) An atypical segment swap in the DN and DC domains of the Acr_tran family resistance-nodulation-cell division pump. Journal of Structural Biology, 196 (3). pp. 358-363. ISSN 10478477

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) An atypical segment swap in the DN and DC domains of the Acr_tran family resistance-nodulation-cell division pump. Journal of structural biology. ISSN 1095-8657 (In Press)

Agrawal, Piyush and Bhalla, Sherry and Usmani, Salman Sadullah and Singh, Sandeep and Chaudhary, Kumardeep and Raghava, G.P.S. and Gautam, Ankur (2016) CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides. Nucleic acids research, 44 (D1). D1098-103. ISSN 1362-4962

Agrawal, Yamini and Narwani, Tarun and Subramanian, Srikrishna (2016) Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp. BMC genomics, 17. p. 367. ISSN 1471-2164

Anil Kumar, Vijjamarri and Goyal, Rajni and Bansal, Roohi and Singh, Nisha and Sevalkar, Ritesh Rajesh and Kumar, Ashwani and Sarkar, Dibyendu (2016) EspR-dependent ESAT-6 Protein Secretion of Mycobacterium tuberculosis Requires the Presence of Virulence Regulator PhoP. The Journal of biological chemistry, 291 (36). pp. 19018-30. ISSN 1083-351X

Arif, Ehtesham and Sharma, Pankaj and Solanki, Ashish and Mallik, Leena and Rathore, Yogendra S and Twal, Waleed O and Nath, Samir K and Gandhi, Darpan and Holzman, Lawrence B and Ostap, E Michael and Ashish, . and Nihalani, Deepak (2016) Structural Analysis of the Myo1c and Neph1 Complex Provides Insight into the Intracellular Movement of Neph1. Molecular and cellular biology, 36 (11). pp. 1639-54. ISSN 1098-5549

Arora, Amit and Cameotra, Swaranjit Singh and Kumar, Rajnish and Balomajumder, Chandrajit and Singh, Anil Kumar and Santhakumari, B and Kumar, Pushpendra and Laik, Sukumar (2016) Biosurfactant as a Promoter of Methane Hydrate Formation: Thermodynamic and Kinetic Studies. Scientific reports, 6. p. 20893. ISSN 2045-2322

B

Bajaj, Abhay and Kumar, Anand and Yadav, Shivani and Kaur, Gurwinder and Bala, Monu and Singh, Nitin Kumar and Mathan Kumar, Rajendran and Manickam, Natesan and Mayilraj, Shanmugam (2016) Isolation and characterization of a novel Gram-negative bacterium Chromobacterium alkanivorans sp. nov., strain IITR-71T degrading halogenated alkanes. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Bhagyaraj, Ella and Nanduri, Ravikanth and Saini, Ankita and Dkhar, Hedwin Kitdorlang and Ahuja, Nancy and Chandra, Vemika and Mahajan, Sahil and Kalra, Rashi and Tiwari, Drishti and Sharma, Charu and Janmeja, Ashok Kumar and Gupta, Pawan (2016)Human Xenobiotic Nuclear Receptor PXR Augments Mycobacterium tuberculosis Survival. Journal of immunology , 197 (1). pp. 244-55. ISSN 1550-6606

Boradia, Vishant Mahendra and Patil, Pravinkumar and Agnihotri, Anushri and Kumar, Ajay and Rajwadi, Kalpesh Kumar and Sahu, Ankit and Bhagath, Naveen and Sheokand, Navdeep and Kumar, Manoj and Malhotra, Himanshu and Patkar, Rachita and Hasan, Navi and Raje, Manoj and Raje, Chaaya Iyengar (2016) Mycobacterium tuberculosis H37Ra: a surrogate for the expression of conserved, multimeric proteins of M.tb H37Rv. Microbial cell factories, 15 (1). p. 140. ISSN 1475-2859

C

Chander, Atul Munish and Kaur, Gurwinder and Nair, Ramesan Girish and Dhawan, Devinder Kumar and Kochhar, Rakesh and Mayilraj, Shanmugam and Bhadada, Sanjay Kumar (2016) Genome Sequencing of Serinicoccus chungangensis Strain CD08_5 Isolated from Duodenal Mucosa of a Celiac Disease Patient. Genome announcements, 4 (2). ISSN 2169-8287

Chander, Atul Munish and Nair, Ramesan Girish and Kaur, Gurwinder and Kochhar, Rakesh and Mayilraj, Shanmugam and Dhawan, Devinder Kumar and Bhadada, Sanjay Kumar (2016) Genome Sequence of Kocuria palustris Strain CD07_3 Isolated from the Duodenal Mucosa of a Celiac Disease Patient. Genome announcements, 4 (2). ISSN 2169-8287

Chandra, Vemika and Bhagyaraj, Ella and Parkesh, Raman and Gupta, Pawan (2016) Transcription factors and cognate signalling cascades in the regulation of autophagy. Biological reviews of the Cambridge Philosophical Society, 91 (2). pp. 429-51. ISSN 1469-185X

Chaudhary, Kumardeep and Kumar, Ritesh and Singh, Sandeep and Tuknait, Abhishek and Gautam, Ankur and Mathur, Deepika and Anand, Priya and Varshney, Grish C and Raghava, G.P.S. (2016) A Web Server and Mobile App for Computing Hemolytic Potency of Peptides. Scientific reports, 6. ISSN 2045-2322

Chaudhary, Kumardeep and Nagpal, Gandharva and Dhanda, Sandeep Kumar and Raghava, G.P.S. (2016) Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants. Scientific reports, 6. p. 20678. ISSN 2045-2322

Chaudhry, Vasvi and Baindara, Piyush and Pal, Vijay Kumar and Chawla, Niharika and Patil, Prabhu B and Korpole, Suresh (2016)Methylobacterium indicum sp. nov., a facultative methylotrophic bacterium isolated from rice seed. Systematic and applied microbiology, 39 (1). pp. 25-32. ISSN 1618-0984

Chaudhry, Vasvi and Patil, Prabhu B (2016) Genomic investigation reveals evolution and lifestyle adaptation of endophytic Staphylococcus epidermidis. Scientific reports, 6. p. 19263. ISSN 2045-2322

D

Dar, Showkat Ahmad and Gupta, Amit Kumar and Thakur, Anamika and Kumar, Manoj (2016) SMEpred workbench: a web server for predicting efficacy of chemically modified siRNAs. RNA biology. ISSN 1555-8584

Dar, Showkat Ahmad and Thakur, Anamika and Qureshi, Abid and Kumar, Manoj (2016) siRNAmod: A database of experimentally validated chemically modified siRNAs. Scientific reports, 6. p. 20031. ISSN 2045-2322

Dhanda, Sandeep Kumar and Chaudhary, Kumardeep and Gupta, Sudheer and Brahmachari, Samir Kumar and Raghava, G.P.S.(2016) A web-based resource for designing therapeutics against Ebola Virus. Scientific reports, 6. p. 24782. ISSN 2045-2322

Dhanda, Sandeep Kumar and Vir, Pooja and Singla, Deepak and Gupta, Sudheer and Kumar, Shailesh and Raghava, G.P.S. (2016) A Web-Based Platform for Designing Vaccines against Existing and Emerging Strains of Mycobacterium tuberculosis. PloS one, 11 (4). e0153771. ISSN 1932-6203

Dhar, Jesmita and Kishore, Raghuvansh and Chakrabarti, Pinak (2016) A novel secondary structure based on fused five-membered rings motif. Scientific reports, 6. p. 31483. ISSN 2045-2322

G

Gahlawat, Geeta and Shikha, Sristy and Chaddha, Baldev Singh and Chaudhuri, Saumya Ray and Mayilraj, Shanmugam and Choudhury, Anirban Roy (2016) Microbial glycolipoprotein-capped silver nanoparticles as emerging antibacterial agents against cholera. Microbial cell factories. ISSN 1475-2859

Ganaie, Arsheed Ahmad and Trivedi, Garima and Kaur, Amanpreet and Jha, Sidharth Shankar and Anand, Shashi and Rana, Vibhutiand Singh, Amit and Kumar, Shekhar and Sharma, Charu (2016) Interaction of Erp Protein of Mycobacterium tuberculosis with Rv2212 Enhances Intracellular Survival of Mycobacterium smegmatis. Journal of bacteriology, 198 (20). pp. 2841-52. ISSN 1098-5530

Gani, Zahid and Boradia, Vishant Mahendra and Raghu Ram, Janaki and Suryavanshi, Prashant Mohan and Patil, Pravinkumar and Kumar, Santosh and Singh, Ranvir and Raje, Manoj and Raje, Chaaya Iyengar (2016) Purification and characterization of glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) from pea seeds. Protein expression and purification, 127. pp. 22-7. ISSN 1096-0279

Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Gupta, Sudheer and Singh, Harinder and Raghava, G.P.S. (2016)Managing Drug Resistance in Cancer: Role of Cancer Informatics. Methods in molecular biology (Clifton, N.J.), 1395. pp. 299-312. ISSN 1940-6029

Gujar, Ravindra and Maurya, Neeraj and Yadav, Vinod and Gupta, Mamta and Arora, Saurabh and Khatri, Neeraj and Sen, Pradip(2016) c-Src Suppresses Dendritic Cell Antitumor Activity via T Cell Ig and Mucin Protein-3 Receptor. Journal of immunology (Baltimore, Md. : 1950), 197 (5). pp. 1650-62. ISSN 1550-6606

Gupta, Amit Kumar and Kaur, Karambir and Rajput, Akanksha and Dhanda, Sandeep Kumar and Sehgal, Manika and Khan, Md Shoaib and Monga, Isha and Dar, Showkat Ahmad and Singh, Sandeep and Nagpal, Gandharva and Usmani, Salman Sadullah and Thakur, Anamika and Kaur, Gazaldeep and Sharma, Shivangi and Bhardwaj, Aman and Qureshi, Abid and Raghava, G.P.S. and Kumar, Manoj (2016) ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis.Scientific reports, 6. p. 32713. ISSN 2045-2322

Gupta, Sudheer and Chaudhary, Kumardeep and Kumar, Rahul and Gautam, Ankur and Nanda, Jagpreet Singh and Dhanda, Sandeep Kumar and Brahmachari, Samir Kumar and Raghava, G.P.S. (2016) Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine. Scientific reports, 6. p. 23857. ISSN 2045-2322

H

Haque, Farazul and Alfatah, Md and Ganesan, K and Bhattacharyya, Mani Shankar (2016) Inhibitory Effect of Sophorolipid on Candida albicans Biofilm Formation and Hyphal Growth. Scientific reports, 6. p. 23575. ISSN 2045-2322

Honnavar, Prasanna and Chakrabarti, Arunaloke and Prasad, Ghandam S and Singh, Pankaj and Dogra, Sunil and Rudramurthy, Shivaprakash M (2016) β-Endorphin enhances the phospholipase activity of the dandruff causing fungi Malassezia globosa and Malassezia restricta. Medical mycology. ISSN 1460-2709

Honnavar, Prasanna and Prasad, Gandham S and Ghosh, Anup and Dogra, Sunil and Handa, Sanjeev and Rudramurthy, Shivaprakash M (2016) Malassezia arunalokei sp. nov., a Novel Yeast Species Isolated from Seborrheic Dermatitis Patients and Healthy Individuals from India. Journal of clinical microbiology, 54 (7). pp. 1826-34. ISSN 1098-660X

I

Ishaq, Mohammad and Ojha, Rani and Sharma, Kapil and Sharma, Gaurav and Singh, Shrawan K and Majumdar, Sekhar (2016)Functional inhibition of Hsp70 by Pifithrin-μ switches Gambogic acid induced caspase dependent cell death to caspase independent cell death in human bladder cancer cells. Biochimica et biophysica acta, 1863 (11). pp. 2560-2573. ISSN 0006-3002

K

Kachhap, Sangita and Priyadarshini, Pragya and Singh, Balvinder (2016) Molecular dynamics simulations show altered secondary structure of clawless in binary complex with DNA providing insights into aristaless-clawless-DNA ternary complex formation. Journal of biomolecular structure & dynamics. pp. 1-15. ISSN 1538-0254 (In Press)

Kaundal, Soni and Uttam, Manju and Thakur, Krishan Gopal (2016) Dual Role of a Biosynthetic Enzyme, CysK, in Contact Dependent Growth Inhibition in Bacteria. PloS one, 11 (7). e0159844. ISSN 1932-6203

Kaur, Gurmeet and Subramanian, Srikrishna (2016) Classification of the treble clef zinc finger: noteworthy lessons for structure and function evolution. Scientific reports, 6. p. 32070. ISSN 2045-2322

Kaur, Gurwinder and Kumar, Narender and Mual, Poonam and Kumar, Anand and Kumar, Rajendran Mathan and Mayilraj, Shanmugam (2016) Brachybacterium aquaticum sp. nov., a novel actinobacterium isolated from sea water. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Kaur, Gurwinder and Mual, Parveen and Kumar, Narender and Verma, Ashish and Kumar, Anand and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2016) Microbacterium aureliae sp. nov., a novel actinobacterium member of the genus Microbacterium isolated from Aurelia aurita, the moon Jelly fish. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Kaur, Karambir and Gupta, Amit Kumar and Rajput, Akanksha and Kumar, Manoj (2016) ge-CRISPR - An integrated pipeline for the prediction and analysis of sgRNAs genome editing efficiency for CRISPR/Cas system. Scientific reports, 6. p. 30870. ISSN 2045-2322

Kaur, Simerpreet and Rana, Vibhuti and Singh, Pooja and Trivedi, Garima and Anand, Shashi and Kaur, Amanpreet and Gupta, Pawan and Jain, Amita and Sharma, Charu (2016) Novel mutations conferring resistance to kanamycin in Mycobacterium tuberculosis clinical isolates from Northern India. Tuberculosis (Edinburgh, Scotland), 96. pp. 96-101. ISSN 1873-281X

Khan, Mohd Shoaib and Gupta, Amit Kumar and Kumar, Manoj (2016) ViralEpi v1.0: a high-throughput spectrum of viral epigenomic methylation profiles from diverse diseases. Epigenomics, 8 (1). pp. 67-75. ISSN 1750-192X

Khan, Nargis and Aqdas, Mohammad and Vidyarthi, Aurobind and Negi, Shikha and Pahari, Susanta and Agnihotri, Tapan and Agrewala, J N (2016) Triggering through NOD-2 Differentiates Bone Marrow Precursors to Dendritic Cells with Potent Bactericidal activity. Scientific reports, 6. p. 27263. ISSN 2045-2322

Khan, Nargis and Pahari, Susanta and Vidyarthi, Aurobind and Aqdas, Mohammad and Agrewala, Javed N (2016) Stimulation through CD40 and TLR-4 Is an Effective Host Directed Therapy against Mycobacterium tuberculosis. Frontiers in immunology, 7. p. 386.

Khan, Nargis and Vidyarthi, Aurobind and Amir, Mohammed and Mushtaq, Khurram and Agrewala, J N (2016) T cell Exhaustion in Tuberculosis: Pitfalls and Prospects. Critical reviews in microbiology. ISSN 1549-7828 (In Press)

Khan, Nargis and Vidyarthi, Aurobind and Javed, Shifa and Agrewala, J N (2016) Innate immunity holding the flanks until reinforced by adaptive immunity against Mycobacterium tuberculosis infection. Frontiers in Microbiology : Infectious disease. ISSN 1093-4715

Khan, Nargis and Vidyarthi, Aurobind and Nadeem, Sajid and Negi, Shikha and Nair, Girish and Agrewala, J N (2016) Alteration in the gut microbiota provokes susceptibility to tuberculosis. Frontiers in Immunology. (In Press)

Khan, Nargis and Vidyarthi, Aurobind and Pahari, Susanta and Negi, Shikha and Aqdas, Mohammad and Nadeem, Sajid and Agnihotri, Tapan and Agrewala, J N (2016) Signaling through NOD-2 and TLR-4 Bolsters the T cell Priming Capability of Dendritic cells by Inducing Autophagy. Scientific reports, 6. p. 19084. ISSN 2045-2322

Khatri, Indu and Sharma, Shailza and Ramya, T N C and Subramanian, Srikrishna (2016) Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics. PloS one, 11 (6). e0156745. ISSN 1932-6203

Krishnan, Ramya and Menon, Rahul R and Likhitha, . and Busse, Hans-Jürgen and Tanaka, Naoto and Krishnamurthi, Srinivasan and Rameshkumar, N (2016) Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice. Research in microbiology. ISSN 1769-7123 (In Press)

Krishnan, Ramya and Menon, Rahul Ravikumar and Tanaka, Naoto and Busse, Hans-Jürgen and Krishnamurthi, Srinivasan and Rameshkumar, Natarajan (2016) Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India. PloS one, 11 (3). e0150322. ISSN 1932-6203

Kumar, Saurav and Bagchi, Sudeshna and Prasad, E.Senthil and Sharma, Anupma and Kumar, Ritesh and Kaur, Rishemjit and Singh, Jagvir and Bhondekar, Amol P (2016) Bacteriorhodopsin-ZnO hybrid as a potential sensing element for low-temperature detection of ethanol vapour. Beilstein journal of nanotechnology, 7. pp. 501-10. ISSN 2190-4286

L

Leo, Vincent V and Passari, Ajit K and Joshi, J Beslin and Mishra, Vineet K and Uthandi, Sivakumar and Ramesh, N and Gupta, Vijai K and Saikia, Ratul and Sonawane, Vijay C and Singh, Bhim P (2016) A Novel Triculture System (CC3) for Simultaneous Enzyme Production and Hydrolysis of Common Grasses through Submerged Fermentation. Frontiers in microbiology, 7. p. 447. ISSN 1664-302X

M

Mahajan, Sahil and Saini, Ankita and Kalra, Rashi and Gupta, Pawan (2016) Frienemies of infection: A chronic case of host nuclear receptors acting as cohorts or combatants of infection. Critical reviews in microbiology, 42 (4). pp. 526-34. ISSN 1549-7828

Maheshwari, Neeraj and Kantipudi, Satish and Maheshwari, Anand and Arora, Kashika and Vandana, . and Kwatra, Neha and Sahni, Girish (2016) Amino-Terminal Fusion of Epidermal Growth Factor 4,5,6 Domains of Human Thrombomodulin on Streptokinase Confers Anti-Reocclusion Characteristics along with Plasmin-Mediated Clot Specificity. PloS one, 11 (3). e0150315. ISSN 1932-6203

Malhotra, Himanshu and Sheokand, Navdeep and Kumar, Santosh and Chauhan, Anoop S and Kumar, Manoj and Jakhar, Priyankaand Boradia, Vishant M and Raje, Chaaya I and Raje, Manoj (2016) Exosomes: Tunable Nano Vehicles for Macromolecular Delivery of Transferrin and Lactoferrin to Specific Intracellular Compartment. Journal of biomedical nanotechnology, 12 (5). pp. 1101-14. ISSN 1550-7033

Malhotra, Neha and Chakraborti, Pradip K (2016) Eukaryotic-Type Ser/Thr Protein Kinase Mediated Phosphorylation of Mycobacterial Phosphodiesterase Affects its Localization to the Cell Wall. Frontiers in microbiology, 7. p. 123. ISSN 1664-302X

Mandal, Santi M and Chakraborty, Dipjyoti and Dutta, Suhrid R and Ghosh, Ananta K and Pati, Bikas R and Korpole, Suresh and Paul, Debarati (2016) Induction of nodD Gene in a Betarhizobium Isolate, Cupriavidus sp. of Mimosa pudica, by Root Nodule Phenolic Acids. Current microbiology, 72 (6). pp. 733-7. ISSN 1432-0991

Mawlankar, Rahul and Thorat, Meghana N and Krishnamurthi, Srinivasan and Dastager, Syed G (2016) Bacillus cellulasensis sp. nov., isolated from marine sediment. Archives of microbiology, 198 (1). pp. 83-9. ISSN 1432-072X

Mishra, Pradeep and Kaur, Suneet and Sharma, Amar Nath and Jolly, R S (2016) Characterization of an Indole-3-Acetamide Hydrolase from Alcaligenes faecalis subsp. parafaecalis and Its Application in Efficient Preparation of Both Enantiomers of Chiral Building Block 2,3-Dihydro-1,4-Benzodioxin-2-Carboxylic Acid. PloS one, 11 (7). e0159009. ISSN 1932-6203

Mual, Poonam and Singh, Nitin Kumar and Verma, Ashish and Schumann, Peter and Krishnamurthi, Srinivasan and Dastager, Syedand Mayilraj, Shanmugam (2016) Reclassification of Bacillus isronensisShivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009. International journal of systematic and evolutionary microbiology, 66 (5). pp. 2113-20. ISSN 1466-5034

Muthu Krishnan, S (2016) Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach. Journal of theoretical biology, 409. pp. 27-37. ISSN 1095-8541

Mutreja, Ruchi and Jariyal, Monu and Pathania, Preeti and Sharma, Arunima and Sahoo, D K and Suri, C Raman (2016) Novel surface antigen based impedimetric immunosensor for detection of Salmonella typhimurium in water and juice samples. Biosensors & bioelectronics, 85. pp. 707-13. ISSN 1873-4235

N

Nallabelli, Nayudu and Patil, Prashant P and Pal, Vijay Kumar and Singh, Namrata and Jain, Ashish and Patil, Prabhu B and Grover, Vishakha and Korpole, Suresh (2016) Biochemical and genome sequence analyses of Megasphaera sp. strain DISK18 from dental plaque of a healthy individual reveals commensal lifestyle. Scientific reports, 6. p. 33665. ISSN 2045-2322

Nupur, L N U and Vats, Asheema and Dhanda, Sandeep Kumar and Raghava, G.P.S. and Pinnaka, Anil Kumar and Kumar, Ashwani(2016) ProCarDB: a database of bacterial carotenoids. BMC microbiology, 16. p. 96. ISSN 1471-2180

P

Pathak, Deepika and Bhat, Aadil Hussain and Sapehia, Vandana and Rai, Jagdish and Rao, Alka (2016) Biochemical evidence for relaxed substrate specificity of Nα-acetyltransferase (Rv3420c/rimI) of Mycobacterium tuberculosis. Scientific reports, 6. p. 28892. ISSN 2045-2322

Patil, Prashant P and Midha, Samriti and Kumar, Sanjeet and Patil, Prabhu B (2016) Genome Sequence of Type Strains of Genus Stenotrophomonas. Frontiers in microbiology, 7. p. 309. ISSN 1664-302X

Priyanka, Anu and Solanki, Vipul and Parkesh, Raman and Thakur, Krishan Gopal (2016) Crystal structure of the N-terminal domain of human SIRT7 reveals a three-helical domain architecture. Proteins, 84 (10). pp. 1558-63. ISSN 1097-0134

Q

Qureshi, Abid and Kaur, Gazaldeep and Kumar, Manoj (2016) AVCpred: an integrated web server for prediction and design of antiviral compounds. Chemical biology & drug design. ISSN 1747-0285

R

Rai, Pradeep K and Chodisetti, Sathi Babu and Nadeem, Sajid and Maurya, Sudeep K and Gowthaman, Uthaman and Zeng, Weiguang and Janmeja, Ashok Kumar and Jackson, David C and Agrewala, J N (2016) A novel therapeutic strategy of lipidated promiscuous peptide against Mycobacterium tuberculosis by eliciting Th1 and Th17 immunity of host. Scientific reports, 6. ISSN 2045-2322 (In Press)

Rajput, Akanksha and Kaur, Karambir and Kumar, Manoj (2016) SigMol: repertoire of quorum sensing signaling molecules in prokaryotes. Nucleic acids research, 44 (D1). D634-9. ISSN 1362-4962

Randhawa, Anmoldeep and Chawla, Srishti and Mondal, Alok K (2016) Functional dissection of HAMP domains in NIK1 ortholog from pathogenic yeast Candida lusitaniae. Gene, 577 (2). pp. 251-7. ISSN 1879-0038

Randhawa, Harmandeep Kaur and Gautam, Ankur and Sharma, Minakshi and Bhatia, Rakesh and Varshney, Grish C and Raghava, G.P.S. and Nandanwar, Hemraj (2016) Cell-penetrating peptide and antibiotic combination therapy: a potential alternative to combat drug resistance in methicillin-resistant Staphylococcus aureus. Applied microbiology and biotechnology, 100 (9). pp. 4073-4083. ISSN 1432-0614

S

Saini, Ankita and Mahajan, Sahil and Gupta, Pawan (2016) Nuclear receptor expression atlas in BMDCs: Nr4a2 restricts immunogenicity of BMDCs and impedes EAE. European journal of immunology, 46 (8). pp. 1842-53. ISSN 1521-4141

Sankhyan, Anurag and Sharma, Chandresh and Dutta, Durgashree and Sharma, Tarang and Chosdol, Kunzang and Wakita, Takajiand Watashi, Koichi and Awasthi, Amit and Acharya, Subrat K and Khanna, Navin and Tiwari, Ashutosh and Sinha, Subrata (2016)Inhibition of preS1-hepatocyte interaction by an array of recombinant human antibodies from naturally recovered individuals. Scientific reports, 6. p. 21240. ISSN 2045-2322

Satpute, Surekha K and Kulkarni, Gauri R and Banpurkar, Arun G and Banat, Ibrahim M and Mone, Nishigandha S and Patil, Rajendra H and Cameotra, Swaranjit Singh (2016) Biosurfactant/s from Lactobacilli species: Properties, challenges and potential biomedical applications. Journal of basic microbiology. ISSN 1521-4028

Sawhney, Pooja and Katare, Keya and Sahni, Girish (2016) PEGylation of Truncated Streptokinase Leads to Formulation of a Useful Drug with Ameliorated Attributes. PloS one, 11 (5). e0155831. ISSN 1932-6203

Selvaraj, MuthuKrishnan and Puri, Munish and Dikshit, Kanak L. and Lefevre, Christophe (2016) BacHbpred: Support Vector Machine Methods for the Prediction of Bacterial Hemoglobin-Like Proteins. Advances in Bioinformatics, 2016. pp. 1-11. ISSN 1687-8027

Sethi, Deepti and Mahajan, Sahil and Singh, Chaahat and Lama, Amrita and Hade, Mangesh Dattu and Gupta, Pawan and Dikshit, Kanak L (2016) Lipoprotein LprI of Mycobacterium tuberculosis Acts as a Lysozyme Inhibitor. The Journal of biological chemistry, 291 (6). pp. 2938-53. ISSN 1083-351X

Sharma, Astha and Prasad, E.Senthil and Chaturvedi, Harsh (2016) Photon induced separation of bio-nano hybrid complex based on carbon nanotubes and optically active bacteriorhodopsin. Optical Materials Express, 6 (4). p. 986. ISSN 2159-3930

Sharma, Gaurav and Khatri, Indu and Subramanian, Srikrishna (2016) Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T. Genome biology and evolution, 8 (8). pp. 2520-9. ISSN 1759-6653

Sharma, Gaurav and Narwani, Tarun and Subramanian, Srikrishna (2016) Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus. PloS one, 11 (2). e0148593. ISSN 1932-6203

Sharma, Kapil and Ishaq, Mohammad and Sharma, Gaurav and Khan, Mohammad Aslam and Dutta, Rajesh Kumar and Majumdar, Sekhar (2016) Pentoxifylline triggers autophagy via ER stress response that interferes with Pentoxifylline induced apoptosis in human melanoma cells. Biochemical pharmacology, 103 (1). pp. 17-28. ISSN 1873-2968

Sharma, Pankaj and Verma, Neha and Singh, Pradip Kumar and Korpole, Suresh and Ashish, . (2016) Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation. Scientific reports, 6. p. 22475. ISSN 2045-2322

Sheokand, Navdeep and Malhotra, Himanshu and Chauhan, Anoop Singh and Kumar, Manoj and Chaudhary, Surbhi and Patidar, Anil and Boradia, Vishant Mahendra and Raje, Chaaya Iyengar and Raje, Manoj (2016) Reverse overshot water-wheel retroendocytosis of Apo Transferrin extrudes cellular iron. Journal of cell science, 129. pp. 843-53. ISSN 1477-9137

Singh, Harinder and Raghava, G.P.S. (2016) BLAST-based structural annotation of protein residues using Protein Data Bank. Biology direct, 11 (1). p. 4. ISSN 1745-6150

Singh, Harinder and Srivastava, Hemant Kumar and Raghava, G.P.S. (2016) A web server for analysis, comparison and prediction of protein ligand binding sites. Biology direct, 11 (1). p. 14. ISSN 1745-6150

Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2016) SATPdb: a database of structurally annotated therapeutic peptides. Nucleic acids research, 44 (D1). D1119-26. ISSN 1362-4962

T

Thakur, Anamika and Rajput, Akanksha and Kumar, Manoj (2016) MSLVP: prediction of multiple subcellular localization of viral proteins using a support vector machine. Molecular bioSystems, 12 (8). pp. 2572-86. ISSN 1742-2051

Tomar, Rachana and Sharma, Pankaj and Srivastava, Ankit and Bansal, Saurabh and Kundu, Bishwajit and Ashish, . (2016)Structural and functional insights into an archaeal L-asparaginase obtained through the linker-less assembly of constituent domains. Corrigendum. Acta crystallographica. Section D, Structural biology, 72 (Pt 1). p. 180. ISSN 2059-7983

Trivedi, Abhishek and Mavi, Parminder Singh and Bhatt, Deepak and Kumar, Ashwani (2016) Thiol reductive stress induces cellulose-anchored biofilm formation in Mycobacterium tuberculosis. Nature communications, 7. p. 11392. ISSN 2041-1723

Tuteja, Satish K and Chen, Rui and Kukkar, Manil and Song, Chung Kil and Mutreja, Ruchi and Singh, Suman and Paul, Ashok K and Lee, Haiwon and Kim, Ki-Hyun and Deep, Akash and Suri, C Raman (2016) A label-free electrochemical immunosensor for the detection of cardiac marker using graphene quantum dots (GQDs). Biosensors & bioelectronics, 86. pp. 548-56. ISSN 1873-4235

W

Wagner, Mark C and Myslinski, Jered and Pratap, Shiv and Flores, Brittany and Rhodes, George and Campos-Bilderback, Silvia Band Sandoval, Ruben M and Kumar, Sudhanshu and Patel, Monika and Ashish, . and Molitoris, Bruce A (2016) Mechanism of increased clearance of glycated albumin by proximal tubule cells. American journal of physiology. Renal physiology, 310 (10). F1089-102. ISSN 1522-1466

Y

Yadav, Ghanshyam S and Ravala, Sandeep K and Malhotra, Neha and Chakraborti, Pradip K (2016) Phosphorylation Modulates Catalytic Activity of Mycobacterial Sirtuins. Frontiers in microbiology, 7. p. 677. ISSN 1664-302X

A

Agrawal, Yamini and Khatri, Indu and Subramanian, Srikrishna and Shenoy,, Belle Damodara (2015) Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome biology and evolution, 7 (3). pp. 916-30. ISSN 1759-6653

Arora, Amit (2015) MicroRNA targets: potential candidates for indirect regulation by drugs. Pharmacogenetics and Genomics, 25 (3). pp. 107-125. ISSN 1744-6872

Arora, Amit and Cameotra, Swaranjit Singh (2015) Natural Gas Hydrate as an Upcoming Resource of Energy. Journal of Petroleum & Environmental Biotechnology, 06 (01). ISSN 21577463

Arora, Amit and Cameotra, Swaranjit Singh (2015) Techniques for Exploitation of Gas Hydrate (Clathrates) an Untapped Resource of Methane Gas. Journal of Microbial & Biochemical Technology, 07 (02). ISSN 19485948

Arora, Amit and Chandrajit, Balomajumder and Cameotra, Swaranjit Singh (2015) Natural Gas Hydrate (Clathrates) as an Untapped Resource of Natural Gas. Journal of Petroleum & Environmental Biotechnology, 06 (04). ISSN 21577463

Arora, Amit and Cameotra, Swaranjit Singh Chandrajit, Balomajumder (2015) Field Testing of Gas Hydrates - An Alternative to Conventional Fuels. Journal of Petroleum & Environmental Biotechnology, 06 (05). ISSN 21577463

B

Baindara, Piyush and Chaudhry, Vasvi and Mittal, Garima and Liao, Luciano M and Matos, Carolina O and Khatri, Neeraj and Franco, Octavio L and Patil, Prabhu B and Korpole, Suresh (2015) Characterization of the Antimicrobial Peptide Penisin, a Class Ia Novel Lantibiotic from Paenibacillus sp. Strain A3. Antimicrobial agents and chemotherapy, 60 (1). pp. 580-91. ISSN 1098-6596

Bankapalli, Leela Krishna and Mishra, Rahul Chandra and Singh, Balvinder and Raychaudhuri, Saumya (2015) Identification of Critical Amino Acids Conferring Lethality in VopK, a Type III Effector Protein of Vibrio cholerae: Lessons from Yeast Model System. PloS one, 10 (10). e0141038. ISSN 1932-6203

Bari, Vinay K and Sharma, Sushma and Alfatah, Md and Mondal, Alok K and Ganesan, K (2015) Plasma Membrane Proteolipid 3 Protein Modulates Amphotericin B Resistance through Sphingolipid Biosynthetic Pathway. Scientific reports, 5. p. 9685. ISSN 2045-2322

Bhatia, Rakesh and Gautam, Ankur and Gautam, Shailendra K and Mehta, Divya and Kumar, Vinod and Raghava, G.P.S. and Varshney, Grish C (2015) Assessment of SYBR green I dye-based fluorescence assay for screening antimalarial activity of cationic peptides and DNA intercalating agents. Antimicrobial agents and chemotherapy, 59 (5). pp. 2886-9. ISSN 1098-6596

Bhutani, Isha and Loharch, Saurabh and Gupta, Pawan and Madathil, Rethi and Parkesh,Raman (2015) Structure, dynamics, and interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. PloS one, 10 (3). e0119771. ISSN 1932-6203

Bishnoi, Ritika and Khatri, Indu and Subramanian, Srikrishna and Ramya, T N C (2015) Prevalence of the F-type lectin domain. Glycobiology, 25 (8). pp. 888-901. ISSN 1460-2423

C

Chandra, Vemika and Bhagyaraj, Ella and Nanduri, Ravikanth and Ahuja, Nancy and Gupta, Pawan (2015) NR1D1 ameliorates Mycobacterium tuberculosis clearance through regulation of autophagy. Autophagy, 11 (11). pp. 1987-1997. ISSN 1554-8635

Chandra, Vemika and Bhagyaraj, Ella and Parkesh, Raman and Gupta, Pawan (2015) Transcription factors and cognate signalling cascades in the regulation of autophagy. Biological reviews of the Cambridge Philosophical Society. ISSN 1469-185X

Chaudhry, Vasvi and Baindara, Piyush and Pal, Vijay Kumar and Chawla, Niharika and Patil, Prabhu B. and Korpole, Suresh (2015) Methylobacterium indicum sp. nov., a facultative methylotrophic bacterium isolated from rice seed. Systematic and Applied Microbiology. ISSN 07232020

Chauhan, Anoop S and Rawat, Pooja and Malhotra, Himanshu and Sheokand, Navdeep and Kumar(1), Manoj and Patidar, Anil and Chaudhary, Surbhi and Jakhar, Priyanka and Raje, Chaaya I and Raje, Manoj (2015) Secreted multifunctional Glyceraldehyde-3-phosphate dehydrogenase sequesters lactoferrin and iron into cells via a non-canonical pathway. Scientific reports, 5. p. 18465. ISSN 2045-2322

Chodisetti, Sathi Babu and Gowthaman, Uthaman and Rai, Pradeep K and Vidyarthi, Aurobind and Khan, Nargis and Agrewala, J N(2015)Triggering through Toll-like receptor 2 limits chronically stimulated T-helper type 1 cells from undergoing exhaustion. The Journal of infectious diseases, 211 (3). pp. 486-96. ISSN 1537-6613

Chopra, Lipsy and Singh, Gurdeep and Jena, Kautilya Kumar and Verma, Himanshu and Sahoo, Debendra K (2015) Bioprocess development for the production of sonorensin by Bacillus sonorensis MT93 and its application as a food preservative. Bioresource Technology, 175. pp. 358-366. ISSN 09608524

Chopra, Lipsy and Singh, Gurdeep and Kumar Jena, Kautilya and Sahoo, Debendra K (2015) Sonorensin: A new bacteriocin with potential of an anti-biofilm agent and a food biopreservative. Scientific reports, 5. p. 13412. ISSN 2045-2322

D

Dhar, Jesmita and Chakrabarti, Pinak and Saini, Harpreet and Raghava, G.P.S. and Kishore, Raghuvansh (2015) ω- Turn: a novel β-turn mimic in globular proteins stabilized by main-chain to side-chain C−H···O interaction. Proteins, 83 (2). pp. 203-14. ISSN 1097-0134

Dixit, Pooja and Mehta, Ananya and Gahlawat, Geeta and Prasad, G. S. and Choudhury, Anirban Roy (2015) Understanding the effect of interaction among aeration, agitation and impeller positions on mass transfer during pullulan fermentation by Aureobasidium pullulans. RSC Adv., 5 (49). pp. 38984-38994. ISSN 2046-2069

Dkhar, Hedwin Kitdorlang and Gopalsamy, Anupriya and Loharch, Saurabh and Kaur, Amandeep and Bhutani, Isha and Saminathan, Kanmani and Bhagyaraj, Ella and Chandra, Vemika and Swaminathan, Kunchithapadam and Agrawal, Pushpa and Parkesh, Ramanand Gupta, Pawan (2015) Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure- and ligand-based virtual screening. The Journal of biological chemistry, 290 (1). pp. 76-89. ISSN 1083-351X

E

Ettayapuram Ramaprasad, Azhagiya Singam and Singh, Sandeep and Raghava, G.P.S. and Venkatesan, Subramanian (2015) AntiAngioPred: A Server for Prediction of Anti-Angiogenic Peptides. PloS one, 10 (9). e0136990. ISSN 1932-6203

G

Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Raghava, G.P.S. (2015) Computer-Aided Virtual Screening and Designing of Cell-Penetrating Peptides. Methods in molecular biology (Clifton, N.J.), 1324. pp. 59-69. ISSN 1940-6029

Gautam, Ankur and Sharma, Minakshi and Vir, Pooja and Chaudhary, Kumardeep and Kapoor, Pallavi and Kumar, Rahul and Nath, Samir K and Raghava, G.P.S. (2015)Identification and characterization of novel protein-derived arginine-rich cell-penetrating peptides. European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft für Pharmazeutische Verfahrenstechnik e.V, 89. pp. 93-106. ISSN 1873-3441

Gowthaman, Uthaman and Mushtaq, Khurram and Tan, Amabel C and Rai, Pradeep K and Jackson, David C and Agrewala, Javed N(2015) Challenges and solutions for a rational vaccine design for TB-endemic regions. Critical reviews in microbiology, 41 (3). pp. 389-98. ISSN 1549-7828

Gupta, Amit Kumar and Kumar, Manoj (2015) HPVbase--a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas. Scientific reports, 5. p. 12522. ISSN 2045-2322

Gupta, Ashok Kumar and Parasar, Devraj and Sagar, Amin and Choudhary, Vikas and Chopra, Bhupinder Singh and Garg, Renu and Ganguly, Ashish and Khatri, Neeraj (2015) Analgesic and Anti-Inflammatory Properties of Gelsolin in Acetic Acid Induced Writhing, Tail Immersion and Carrageenan Induced Paw Edema in Mice. PloS one, 10 (9). e0135558. ISSN 1932-6203

Gupta, Sudheer and Kapoor, Pallavi and Chaudhary, Kumardeep and Gautam, Ankur and Kumar, Rahul and Raghava, G.P.S. (2015) Peptide toxicity prediction. Methods in molecular biology (Clifton, N.J.), 1268. pp. 143-57. ISSN 1940-6029

I

Islam, Zeyaul and Kumar, Adarsh and Singh, Suruchi and Salmon, Laurent and Karthikeyan, Subramanian (2015) Structural basis for competitive inhibition of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Vibrio cholerae. The Journal of biological chemistry, 290 (18). pp. 11293-308. ISSN 1083-351X

K

Kachhap, Sangita and Singh, Balvinder (2015)>Role of DNA conformation & energetic insights in Msx-1-DNA recognition as revealed by molecular dynamics studies on specific and nonspecific complexes. Journal of biomolecular structure & dynamics. pp. 1-14. ISSN 1538-0254

Kaur, Gurmeet and Subramanian, Srikrishna (2015)The Ku-Mar zinc finger: A segment-swapped zinc ribbon in MarR-like transcription regulators related to the Ku bridge. Journal of structural biology, 191 (3). pp. 281-9. ISSN 1095-8657

Kaur, Gurmeet and Subramanian, Srikrishna (2015)The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers. Biology direct, 10. p. 36. ISSN 1745-6150

Kaur, Gurmeet and Subramanian, Srikrishna (2015)The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon.Journal of structural biology, 190 (1). pp. 38-46. ISSN 1095-8657

Kaur, Gurmeet and Subramanian, Srikrishna (2015) A novel RING finger in the C-terminal domain of the coatomer protein α-COP. Biology direct, 10 (1). p. 70. ISSN 1745-6150

Kaur, Harneet and Dolma, Kunzes and Kaur, Navjot and Malhotra, Ankit and Kumar, Navinder and Dixit, Pooja and Sharma, Deepakand Mayilraj, S. and Choudhury, Anirban Roy (2015) Marine microbe as nano-factories for copper biomineralization. Biotechnology and Bioprocess Engineering, 20 (1). pp. 51-57. ISSN 1226-8372

Kaur, Karambir and Tandon, Himani and Gupta, Amit Kumar and Kumar, Manoj (2015) CrisprGE: a central hub of CRISPR/Cas-based genome editing. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

Kaur, Suneet and Srivastava, Gautam and Sharma, Amar Nath and Jolly, R S (2015) Novel immunosuppressive agent caerulomycin A exerts its effect by depleting cellular iron content. British journal of pharmacology, 172 (9). pp. 2286-99. ISSN 1476-5381

Khan, Nargis and Pahari, Susanta and Vidyarthi, Aurobind and Aqdas, Mohammad and Agrewala, Javed N (2015)NOD-2 and TLR-4 Signaling Reinforces the Efficacy of Dendritic Cells and Reduces the Dose of TB Drugs against Mycobacterium tuberculosis. Journal of innate immunity. ISSN 1662-8128

Khan, Nargis and Vidyarthi, Aurobind and Pahari, Susanta and Agrewala, J N (2015)Distinct Strategies Employed by Dendritic Cells and Macrophages in Restricting Mycobacterium tuberculosis Infection: Different Philosophies but Same Desire. International reviews of immunology. ISSN 1563-5244

Kujur, Weshely and Gurram, Rama Krishna and Haleem, Nazia and Maurya, Sudeep K and Agrewala, J N (2015)Caerulomycin A inhibits Th2 cell activity: a possible role in the management of asthma. Scientific reports, 5. p. 15396. ISSN 2045-2322

Kumar, Anand and Kaur, Gurwinder and Bajaj, Abhay and Kaur, Navjot and Mathan Kumar, Rajendran and Singh, Nitin Kumar and Manickam, Natesan and Mayilraj, Shanmugam (2015) Taxonomic description and Genome sequence of Rheinheimera mesophila sp. nov., strain IITR-13T isolated from an industrial waste site. International Journal of Systematic and Evolutionary Microbiology. ISSN 1466-5026 (In Press)

Kumar, Rahul and Chauhan, Jagat Singh and Raghava, G.P.S. (2015) TIn Silico Designing and Screening of Antagonists against Cancer Drug Target XIAP. Current cancer drug targets, 15 (9). pp. 836-46. ISSN 1873-5576

Kumar, Ravi and Chaudhary, Kumardeep and Sharma, Minakshi and Nagpal, Gandharva and Chauhan, Jagat Singh and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2015) AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic acids research, 43 (Databa). D956-62. ISSN 1362-4962

Kumar, Ravi and Chaudhary, Kumardeep and Singh Chauhan, Jagat and Nagpal, Gandharva and Kumar, Rahul and Sharma, Minakshi and Raghava, G.P.S. (2015)An in silico platform for predicting, screening and designing of antihypertensive peptides. Scientific Reports, 5. p. 12512. ISSN 2045-2322

L

Loharch, Saurabh and Bhutani, Isha and Jain, Kamal and Gupta, Pawan and Sahoo, Debendra K and Parkesh, Raman (2015)EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

M

Macdonald, Ramsay and Sarkar, Dibyendu and Amer, Brendan R and Clubb, Robert T (2015)Solution structure of the PhoP DNA-binding domain from Mycobacterium tuberculosis. Journal of biomolecular NMR, 63 (1). pp. 111-7. ISSN 1573-5001

Mahajan, Sahil and Saini, Ankita and Chandra, Vemika and Nanduri, Ravikanth and Kalra, Rashi and Bhagyaraj, Ella and Khatri, Neeraj and Gupta, Pawan (2015) Nuclear Receptor Nr4a2 Promotes Alternative Polarization of Macrophages and Confers Protection in Sepsis. The Journal of biological chemistry, 290 (30). pp. 18304-14. ISSN 1083-351X

Mathan Kumar, Rajendran and Kaur, Gurwinder and Kumar, Narender and Kumar, Anand and Singh, Nitin Kumar and Bala, Monuand Kaur, Navjot and Mayilraj, Shanmugam (2015)Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a novel halotolerant bacterium isolated from marine sediment. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Mathan Kumar., Rajenderan and Kaur, Gurwinder and Kumar, Anand and Kaur, Navjot and Bala, Monu and Singh, Nitin Kumar and Mayilraj, Shanmugam (2015)Taxonomic description and Genome sequence of Bacillus campisalissp. nov., a novel member of the genus Bacillusisolated from solar saltern. International journal of systematic and evolutionary microbiology. ISSN 1466-5026 (In Press)

Midha, Samriti and Bansal, Kanika and Sharma, Shikha and Kumar, Narinder and Patil, Prashant P and Chaudhry, Vasvi and Patil, Prabhu B (2015) Genomic Resource of Rice Seed Associated Bacteria. Frontiers in microbiology, 6. p. 1551. ISSN 1664-302X

Mushtaq, Khurram and Sheikh, Javaid A and Amir, Mohammed and Khan, Nargis and Singh, Balvinder and Agrewala, J N (2015) Rv2031c of Mycobacterium tuberculosis: a master regulator of Rv2028-Rv2031 (HspX) operon. Frontiers in microbiology, 6. p. 351. ISSN 1664-302X

N

Nagpal, Gandharva and Gupta, Sudheer and Chaudhary, Kumardeep and Kumar Dhanda, Sandeep and Prakash, Satya and Raghava, G.P.S. (2015)VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants. Scientific Reports, 5. p. 12478. ISSN 2045-2322

Nanduri, Ravikanth and Bhutani, Isha and Somavarapu, Arun Kumar and Mahajan, Sahil and Parkesh, Raman and Gupta, Pawan(2015)ONRLDB-manually curated database of experimentally validated ligands for orphan nuclear receptors: insights into new drug discovery. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

Nanduri, Ravikanth and Mahajan, Sahil and Bhagyaraj, Ella and Sethi, Kanupriya and Kalra, Rashi and Chandra, Vemika and Gupta, Pawan (2015) The Active Form of Vitamin D Transcriptionally Represses Smad7 Signaling and Activates Extracellular Signal-regulated Kinase (ERK) to Inhibit the Differentiation of a Inflammatory T Helper Cell Subset and Suppress Experimental Autoimmune Encephalomyelitis. The Journal of biological chemistry, 290 (19). pp. 12222-36. ISSN 1083-351X

P

Pal, Mohan and Srivastava, Gautam and Sharma, Amar Nath and Kaur, Suneet and Jolly, R S (2015)Biocatalyzed asymmetric reduction of benzils to either benzoins or hydrobenzoins: pH dependent switch. Catal. Sci. Technol., 5 (8). pp. 4017-4028. ISSN 2044-4753

Pandey, Satish K. and Rishi, Praveen and Suri, C Raman and Vinayaka, Aaydha C. (2015)Anodic stripping voltammetry of anti-Vi antibody functionalized CdTe quantum dots for the specific monitoring of Salmonella enterica serovar Typhi. RSC Adv., 5 (107). pp. 88234-88240. ISSN 2046-2069

Panwar, Bharat and Raghava, G.P.S. (2015)Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides. Genomics, 105 (4). pp. 197-203. ISSN 1089-8646

Q

Qureshi, Abid and Tandon, Himani and Kumar, Manoj (2015)AVP-IC50 Pred: Multiple machine learning techniques-based prediction of peptide antiviral activity in terms of half maximal inhibitory concentration (IC50 ). Biopolymers, 104 (6). pp. 753-63. ISSN 1097-0282

R

Rajput, Akanksha and Gupta, Amit Kumar and Kumar, Manoj (2015Prediction and analysis of quorum sensing peptides based on sequence features. PloS one, 10 (3). e0120066. ISSN 1932-6203

Rathore, Yogendra S and Dhoke, Reema R and Badmalia, Maulik and Sagar, Amin and Ganguly, Ashish (2015)SAXS Data Based Global Shape Analysis of Trigger Factor (TF) Proteins from E. coli, V. cholerae, and P. frigidicola: Resolving the Debate on the Nature of Monomeric and Dimeric Forms. The journal of physical chemistry. B, 119 (20). pp. 6101-12. ISSN 1520-5207

Ravala, Sandeep K and Singh, Suruchi and Yadav, Ghanshyam S and Kumar, Sanjay and Karthikeyan, Subramanian and Chakraborti, Pradip K (2015)Evidence that phosphorylation of threonine in the GT motif triggers activation of PknA, a eukaryotic-type serine/threonine kinase from Mycobacterium tuberculosis. The FEBS journal, 282 (8). pp. 1419-31. ISSN 1742-4658

Rawat, Sanjay and Gupta, Pawan and Kumar, Anil and Garg, Prabha and Suri, C Raman and Sahoo, Debendra K (2015)Molecular mechanism of poly(vinyl alcohol) mediated prevention of aggregation and stabilization of insulin in nanoparticles. Molecular pharmaceutics, 12 (4). pp. 1018-30. ISSN 1543-8392

Rehan, Mohammad and Sagar, Amin and Sharma, Vandna and Mishra, Sanskruti and Ganguly, Ashish and Sahni, Girish (2015)Penta-L-lysine Potentiates Fibrin-Independent Activity of Human Tissue Plasminogen Activator. The journal of physical chemistry. B, 119 (42). pp. 13271-7. ISSN 1520-5207

S

Sebastian Samuel, Jesse and Kumar, Deepak and Babu Chodisetti, Sathi and Agrewala, Javed N and Singh, Balvinder and Guptasarma, Purnananda and Sarkar, Dibyendu (2015)Probing protease sensitivity of recombinant human erythropoietin reveals α3-α4 inter-helical loop as a stability determinant. Proteins, 83 (10). pp. 1813-22. ISSN 1097-0134

Sethi, Deepti and Mahajan, Sahil and Singh, Chaahat and Lama, Amrita and Hade, Mangesh Dattu and Gupta, Pawan and Dikshit, Kanak L (2015)Lipoprotein, LprI, of Mycobacterium tuberculosis acts as a lysozyme inhibitor. The Journal of biological chemistry. ISSN 1083-351X

Shukla, Abha and Cameotra, Swaranjit Singh (2015)Saving Petroleum using Smart Strategies. Journal of Petroleum & Environmental Biotechnology, 06 (03). ISSN 21577463

Siddiqui, K F and Amir, M and Khan, N and Krishna, G Rama and Sheikh, J A and Rajagopal, K and Agrewala, J N (2015)Prime-boost vaccination strategy with bacillus Calmette-Guérin (BCG) and liposomized alpha-crystalline protein 1 reinvigorates BCG potency. Clinical and experimental immunology. ISSN 1365-2249 (In Press)

Singh, Appu Kumar and Manjasetty, Babu and Balasubramani, G L and Koul, Sukirte and Kaushik, Abhishek and Ekka, Mary Krishnaand Singh, Vijay and Kumaran, Sangaralingam (2015)Crystal Structure of Fad35R from Mycobacterium tuberculosis H37Rv in the Apo-State. PloS one, 10 (5). e0124333. ISSN 1932-6203

Singh, Harinder and Gupta, Sudheer and Gautam, Ankur and Raghava, G.P.S. (2015) Designing B-Cell Epitopes for Immunotherapy and Subunit Vaccines. Methods in molecular biology (Clifton, N.J.), 1348. pp. 327-40. ISSN 1940-6029

Singh, Harinder and Kumar, Rahul and Singh, Sandeep and Chaudhary, Kumardeep and Gautam, Ankur and Raghava, G.P.S. (2015)Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines. BMC cancer, 16 (1). p. 77. ISSN 1471-2407

Singh, Harinder and Singh, Sandeep and Raghava, G.P.S. (2015)In silico platform for predicting and initiating β-turns in a protein at desired locations. Proteins, 83 (5). pp. 910-21. ISSN 1097-0134

Singh, Harinder and Singh, Sandeep and Singla, Deepak and Agarwal, Subhash M and Raghava, G.P.S. (2015)QSAR based model for discriminating EGFR inhibitors and non-inhibitors using Random forest. Biology direct, 10. p. 10. ISSN 1745-6150

Singh, Nisha and Kumar, Ashwani (2015)Virulence Factor SenX3 Is the Oxygen-Controlled Replication Switch ofMycobacterium tuberculosis. Antioxidants & Redox Signaling, 22 (7). pp. 603-613. ISSN 1523-0864

Singh, Pradip Kumar and Kumari, Annu and Chawla, Niharika and Pinnaka, Anil Kumar and Korpole, Suresh (2015)Rhodococcus lactis sp. nov., an actinobacterium isolated from sludge of a dairy waste treatment. International journal of systematic and evolutionary microbiology, 65. ISSN 1466-5034

Singh, Pradip Kumar and Solanki, Vipul and Sharma, Shalley and Thakur, Krishan Gopal and Krishnan, Beena and Korpole, Suresh(2015)The intramolecular disulfide-stapled structure of laterosporulin, a class IId bacteriocin, conceals a human defensin-like structural module. The FEBS journal, 282 (2). pp. 203-14. ISSN 1742-4658

Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2015)SATPdb: a database of structurally annotated therapeutic peptides. Nucleic Acids Research, 44 (D1). D1119-D1126. ISSN 0305-1048

Singh, Sandeep and Singh, Harinder and Tuknait, Abhishek and Chaudhary, Kumardeep and Singh, Balvinder and Kumaran, S and Raghava, G.P.S. (2015)PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues. Biology direct, 10 (1). p. 73. ISSN 1745-6150

Singh, Satish and Rathore, Yogendra Singh and Bhando, Timsy and Hade, Mangesh Dattu and Ganguly, Ashish and Dikshit, Kanak L(2015) Bilobed shape of PadA reveals the connectivity from single to multi-domain bacterial plasminogen activators. International journal of biological macromolecules, 78. pp. 370-8. ISSN 1879-0003

Sonkusre, Praveen and Singh Cameotra, Swaranjit (2015)Biogenic selenium nanoparticles inhibit Staphylococcus aureus adherence on different surfaces. Colloids and surfaces. B, Biointerfaces, 136. pp. 1051-7. ISSN 1873-4367

Srinivasan, Vijaya Bharathi and Vaidyanathan, Vasanth and Rajamohan, Govindan (2015)AbuO, a TolC-like outer membrane protein of Acinetobacter baumannii, is involved in antimicrobial and oxidative stress resistance. Antimicrobial agents and chemotherapy, 59 (2). pp. 1236-45. ISSN 1098-6596

Srinivasan, Vijaya Bharathi and Venkataramaiah, Manjunath and Mondal, Amitabha and Rajamohan, Govindan (2015)Functional Characterization of AbeD, an RND-Type Membrane Transporter in Antimicrobial Resistance in Acinetobacter baumannii. PloS one, 10 (10). e0141314. ISSN 1932-6203

Srivastava, Gautam and Pal, Mohan and Kaur, Suneet and Jolly, R S (2015)A highly efficient designer cell for enantioselective reduction of ketones. Catalysis Science & Technology, 5 (1). pp. 105-108. ISSN 2044-4753

T

Tyagi, Atul and Tuknait, Abhishek and Anand, Priya and Gupta, Sudheer and Sharma, Minakshi and Mathur, Deepika and Joshi, Anshika and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2015) CancerPPD: a database of anticancer peptides and proteins. Nucleic acids research, 43. D837-43. ISSN 1362-4962

Tyagi, Mohit and Taxak, Nikhil and Bharatam, Prasad V and Nandanwar, Hemraj and Kartha, K P Ravindranathan (2015)Mechanochemical click reaction as a tool for making carbohydrate-based triazole-linked self-assembling materials (CTSAMs). Carbohydrate research, 407. pp. 137-47. ISSN 1873-426X

V

Vaidya, Bhumika and Kumar, Ravinder and Korpole, Suresh and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2015)Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water. International journal of systematic and evolutionary microbiology, 65 (7). pp. 2056-63. ISSN 1466-5034

Venugopalan, Paloth and Kishore, Raghuvansh (2015)Antiparallel Self-Association of a γ,α-Hybrid Peptide: More Relevance of Weak Interactions. Chemistry: an Asian journal. ISSN 1861-471X

Verma, Ashish and Mual, Poonam and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2015)Tamilnaduibacter salinus gen. nov., sp. nov., a halotolerant Gammaproteobacterium within the family Alteromonadaceae isolated from a salt-pan in Tamilnadu, India. International journal of systematic and evolutionary microbiology, 65 (10). pp. 3248-3255. ISSN 1466-5034

Verma, Deepshikha and Das, Lahari and Gambhir, Vandana and Dikshit, Kanak Lata and Varshney, Grish C (2015)Heterogeneity among Homologs of Cutinase-Like Protein Cut5 in Mycobacteria. PloS one, 10 (7). e0133186. ISSN 1932-6203

Vyas, B. and Singh, A.K and Cameotra, Swaranjit Singh (2015)Sorption behaviour of maneb in the agriculture soils and its correlation with soil properties. International Journal of Engineering Research and Science, 1 (8). ISSN 23956992

W

Walia, Navpreet kaur and Cameotra, Swaranjit Singh (2015)Lipopeptides: Biosynthesis and Applications. Journal of Microbial & Biochemical Technology, 07 (02). ISSN 19485948

Y

Yadav, Savita and Karthikeyan, Subramanian (2015)Structural and biochemical characterization of GTP cyclohydrolase II from Helicobacter pylori reveals its redox dependent catalytic activity. Journal of structural biology, 192 (1). pp. 100-15. ISSN 1095-8657